KEGG   Rhincodon typus (whale shark): 109910469
Entry
109910469         CDS       T06055                                 
Symbol
ptcd1
Name
(RefSeq) pentatricopeptide repeat-containing protein 1, mitochondrial
  KO
K17710  pentatricopeptide repeat domain-containing protein 1
Organism
rtp  Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:rtp03016]
    109910469 (ptcd1)
   03029 Mitochondrial biogenesis [BR:rtp03029]
    109910469 (ptcd1)
Transfer RNA biogenesis [BR:rtp03016]
 Eukaryotic type
  3'processing and CCA adding factors
   3'processing factors
    109910469 (ptcd1)
Mitochondrial biogenesis [BR:rtp03029]
 Mitochondrial DNA transcription, translation, and replication factors
  Mitochondrial transcription and translation factors
   Other mitochondrial DNA transcription and translation factors
    109910469 (ptcd1)
SSDB
Motif
Pfam: PPR_2 PPR_3 PPR_long PPR_1 PPR
Other DBs
NCBI-GeneID: 109910469
NCBI-ProteinID: XP_020365247
Position
Unknown
AA seq 732 aa
MAWPWFLPLQHSRTYLPMRLCSSLCSYLAPFRHLSTFMRSSPVRAVSPRNVTHPRNLLFW
NHGWTGLPRMVSNGQSCDTEDRQIPASPGQDSSVPSSGNETDLEGFGERGRIYSSRRFFR
KSSPELQDSRHRDTEDQDEEETERLEVRRKPRRRNTTYWYFLQCKKLIKEDKLAEALHMF
ETQMVKEERLIPEEYNYTVLIGGCGRVGYLKKAFQLYNDMKKRAVTPSEATYTALFNACA
ETPWKESGLQFATKLREELTSKNIHLNLIAYHAMLKAFAVCSDLKACFDVLREIVHSGHK
MNVETFSTLMIGCIKDTENGFRYLLQIWREMLKLGVKPDVKSYNLLLRATRDCGLGDPAV
ASRLLLADEGEVWQLNQRGRFRRVKGRKEARSSKNTTTLVVGLLEEQLFGLASDQPASYR
VSEPKAELSDETLPKLMETQNLLSGDGQEKALVSQGVHSVELVPRNQILPIDSDSSELPE
TAHLPNLLDVQVDKKNIVSLGTVATPPDRLALIGYLSGILNKMKEDSVSPDIKTFTLLAE
VVEPNSQSESSLLALMEEQGVRPDISFFNTFIRKKSKLGDLEGAKALLPVLVKQGLSPTL
HTFCNLAIACRKERDGLKLLHDMKMSGLTPNVNVYSTLINNATKQLDYAYLTKILQDMAR
NQVRPNEVVLRQLEFAVKYPPKFDKYKSKNIYLEKIDGFRGYYYRWLNFMPAAETPHPWE
KYRIKSQVSATE
NT seq 2199 nt   +upstreamnt  +downstreamnt
atggcctggccttggtttttaccgcttcagcattcccggacataccttcccatgagactt
tgctcttccctgtgttcatacctggccccattcagacatttgagcacttttatgaggagt
agccctgtgagagctgtgtctcctcgaaatgtgactcaccccaggaatttactgttttgg
aatcatggatggacgggtttacccaggatggtcagcaacggccagagctgcgacacggaa
gacaggcagattccagcctcacccggccaggactcatcagttccctcatctgggaatgaa
actgacttggaaggatttggagaaaggggcagaatctactcttccaggagatttttccgc
aaaagctctccagagctgcaggattccagacaccgtgacaccgaggatcaggatgaggag
gagactgaacgtcttgaagtgagacgcaagccacgccgaaggaacacgacgtactggtac
tttctgcagtgcaagaaactcatcaaggaagataagttggctgaggcactgcacatgttt
gagactcaaatggttaaagaggagcggctgatcccagaggagtacaattacacagtgcta
atagggggctgtggacgagtgggctacttgaaaaaagcctttcagctctacaacgacatg
aagaagagagctgtgactccttctgaagccacctacactgctctgttcaatgcttgtgca
gaaacaccatggaaggagtctggtctacagtttgccacaaagctccgggaagagttaacc
agcaagaatatccatcttaacctgattgcataccacgccatgttgaaggcattcgctgtc
tgctcagatctaaaggcctgttttgatgtgcttcgggaaatagttcatagtggtcataag
atgaacgtggaaacattcagcactttaatgattggttgcatcaaggacacggaaaatggt
tttagatatttgctacagatttggcgagagatgttaaaactgggcgtgaagcccgatgtc
aagagctacaacttgctgctgcgagccacgagggactgtggtcttggggacccagcggtg
gcctcacggttgctgttggcagatgagggtgaagtctggcagctgaaccagcgtggaaga
tttcggagagtcaaaggccgaaaggaggcgagaagcagcaaaaacacgacgactctggtg
gttggtttattggaagagcagctatttggactggcttctgaccaaccagccagctacaga
gtctctgaaccaaaggctgagctcagtgacgaaactttaccaaaactgatggaaacacaa
aatctactgtccggtgatgggcaagagaaagcgctagtgtcacaaggagtgcactctgtg
gaactagttcccagaaaccaaatacttccaattgattcagactccagcgagcttcctgaa
actgcgcatctacctaacctactcgatgttcaggtcgacaagaagaatatcgtttcctta
ggaacggtagctacaccacctgacagactggcactgattggatatctgagtggcattcta
aataagatgaaggaagatagtgtgtctccagacattaaaaccttcacacttttggctgaa
gtggtggaaccaaacagccaatccgagtcttccttgttagccctcatggaagagcaaggt
gtgaggccagacatttcattttttaacaccttcattcgaaaaaagagcaagctgggtgac
ctggagggagctaaggcactactgccagtacttgtcaaacaaggcttatcaccaaccctg
cacaccttctgtaacctggctatagcctgcagaaaagagagagacggcctgaagcttctc
catgacatgaagatgtctggattaacccccaatgtcaatgtgtatagcaccttgatcaac
aatgcaacaaagcagttggactatgcatatctcacaaagatcctacaagatatggcaaga
aatcaagtacgacccaacgaggtcgtccttaggcaactggaatttgcagtcaagtatcct
ccaaaatttgacaagtacaagtcaaaaaatatctatctggaaaaaattgatggctttcgt
ggatattactatcgctggttaaactttatgcctgcagcagaaacaccacatccatgggaa
aagtacaggattaagagtcaggtctcagcaacagaataa

DBGET integrated database retrieval system