KEGG   Rhincodon typus (whale shark): 109913004
Entry
109913004         CDS       T06055                                 
Symbol
col4a5
Name
(RefSeq) collagen alpha-5(IV) chain isoform X1
Organism
rtp  Rhincodon typus (whale shark)
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 109913004
NCBI-ProteinID: XP_048461049
Position
14:17904505..18137347
AA seq 1695 aa
MRLEYSSIDQLSARIFLLLSALTVLVQNSEAAACHGCATASNCDCSGVKGEKGVRGLPGL
EGHMGLPGFPGPEGPPGPRGLKGDTGPPGLPGPKGIRGPPGLPGFPGTPGVPGLPGQDGP
PGPPGIPGCNGTKGERGFPGSSGFPGSQGRPGPPGLPGQKGEPGEVLSSQVFGYKGDPGL
PGVPGLPGPQGPVGAPGNPGPVGPSGQPGNPGPPGPPGPKGNMGLNFQGPKGEKGDPGLQ
GPPGPPGQLEQLNSPGVDFQKGEKGEMGPPGDPGERGFPGPAGPPGFGSKGEKGEPGDNG
KRGKPGKDGEPGGPGFDGLPGDPGQPGIPGRDGPKGQKGERGFSGPPGITFPRPGVTVGQ
KGDPGFPGSPGEKGDRGPPGLLGVQGPPGAPGLSSTGPPGTPGFPGERGQKGDEGVPGFA
LPGPQGAIGRPGPSGPPGPPGQPGRSVPGVGLQCQPGQPGLPGSPGATGFPGERGLKGDK
GDTCFNCFGTGNGATGLPGPPGPHGLPGQPGLPGMKGDRGLPGPIGTLGPPGSPGSPGIP
GARGPKGERGDGFGFPGPKGDRGSPGFPGPPGLPGLDGTPGRNGLPGPPGPKGLPGGLAV
KGSIGPPGDPGPIGFPGERGPPGPPGFGPPGYPGEKGAQGVSGRPGAPGAPGAKGDSGQT
VSEPGPRGPPGLPGEPGLAGRPGDPGQPGQPGLPGLQGPKGDRGVPGIGFPGPSGPKGLP
GLPGSPGAPGGPGRPGRDGTPGQPGIPGPKGDPGFGFPGPPGPPGPQGINGLPGPKGDPG
ITGLPGQPGRPGLDGTFGSKGDPGFTGPPGPPGPIGPPGLGGRGVPGPQGPPGLPGQPGQ
PGLPGRIGEKGDPGPPGLDIPGPPGEKGNTGFPGSPGPVGPPGIPGQPARDGLPGPPGPK
GEMGVMGTPGPPGSPGPPGAPGLLGPKGNEGIPGRPGNPGGPGFKGDKGDPGLPGVPGTI
DPGQIFAGQKGERGIPGSPGLPGAKGFTGLPGDPGAPGQDGLPGLPGGPGIKGDSGYPGQ
PGSPGLPGPKGSMGEMGLPGPPGSKGSLGSPGRPGQPGTPGGPGLKGEKGDSGIPELGSP
GPPGQKGEPGAPGFPGNPGSKGVPGGPGLPGLPGAPGPKGDSGQPGFPGTPGIPGPKGID
GFPGSPGLIGPPGPPGEPSPPGIPGPPGEKGQPGRDGIPGRAGLKGDPGAPGLGRPGAPG
SPGIPGPKGDPGVPGNPGGPGAPGLKGDPGFPGFTGQQGPPGPPGPPGRSLEGPKGSPGS
PGQPGRPGPPGPQGPQGPIGPRGPPGFGGIKGEKGNPGLPGSPGFPGPKGEIGPPGIAGS
PGQPGFTGLKGDPGSPGLPGFPGMKGSPGSPGAKGLPGDLGPPGPRGLPGPPGPQVPARI
VKGERGYPGPPGQPGTKGLPGPIGLPGPPGPAGPPGDPGQDGIPGFNGPSGLKGERGFPG
DPGDRGFSGPPGPDGTPGVPGLPGSPSVAHGFLVTRHSQSTDVPRCPPGTLTIYDGYSLL
YVQGNERAHGQDLGTAGSCLRRFSTMPFMFCNINNVCNFASRNDYSYWLSTPQPMPMSMA
PVNGENIRPFISRCSVCEAPALVIAIHSQTIQIPQCPEGWSSLWIGYSFMMHTSAGAEGS
GQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATVETVEMFSKPQPETLKAGE
LRTRVSRCQVCMKRT
NT seq 5088 nt   +upstreamnt  +downstreamnt
atgaggcttgaatattcctccatcgaccaacttagtgctcggatatttttgctgctatcg
gcgctaacagttttggtgcagaactccgaggcagcggcttgtcatgggtgtgcaacggcc
tcaaattgtgactgtagtggagtgaaaggtgaaaagggtgtgaggggtctgccaggactg
gagggtcacatgggtttacctggtttcccagggccggaggggccacctggaccaagaggt
ctaaagggtgacactggaccacctgggttaccaggacctaaaggaataagaggacctcca
ggtcttccaggctttcccggaacccctggtgttccagggttaccaggtcaggatggtcct
ccgggtcctccaggcatcccaggttgcaacggaacaaagggcgaacgaggatttccaggt
agttctggctttcctgggtcacagggccgtccaggtccccctgggcttccaggccaaaag
ggtgaaccaggtgaggtgctgtcatcgcaggtttttgggtacaaaggagatccaggattg
cccggtgtccctggtttaccgggtccccagggcccagtgggagctccaggtaatcctggt
cctgttggtccatcaggtcagccgggtaatccgggccctcctggtccacctggtccaaag
gggaacatgggcttgaatttccaaggacctaaaggggagaagggtgatccaggtcttcaa
ggtcccccaggtcccccgggtcagttggaacagctgaattcccctggcgtcgacttccag
aaaggagaaaagggtgagatgggaccacctggtgatcctggggagaggggctttcctggc
cctgcaggccctcctggctttggcagcaaaggcgagaagggtgagccaggagataacgga
aagagaggtaaaccaggaaaagatggagagccaggtggccctggatttgatggtctccca
ggggatccaggtcaaccaggaattccaggtagagatggacctaagggtcagaaaggagaa
cgaggtttctctggtcctccaggcattacatttccacgaccaggtgttacagttggacaa
aaaggtgatccaggttttccaggctctcctggagaaaaaggagatcgaggtcccccagga
cttctaggagtacaaggaccaccaggtgctccaggtctgtccagtacgggaccaccaggc
accccgggtttcccaggcgaaagaggtcagaaaggggacgaaggcgttcctggatttgca
ctgccaggtccgcaaggagcaattggtcgcccaggccccagtggtcctccaggccctcct
ggtcaaccagggcgttcagttcctggtgttgggttgcaatgtcagccagggcagccagga
ttaccagggtcaccaggagcaaccggcttcccaggagagagaggactgaaaggggataag
ggagacacatgctttaactgttttggtactggcaatggagctactggtctaccaggacct
cctggaccacatggacttccaggtcaaccaggattgccaggaatgaaaggagatcgtgga
ctacctggtccgattggaactttgggaccgcctggttcgccaggctctcctggtattcca
ggagcccgtggcccgaaaggtgaacgtggagatggctttggctttccaggcccaaaaggt
gatcgagggagccctggtttcccaggacctccaggacttccaggattagatggcacccca
ggaagaaatggtctgcctggaccacctggtcctaaaggattacctggcggcttggccgtc
aaaggatcaatcggaccccctggagatccaggccccatcggatttccaggagagagaggt
cccccgggaccaccaggatttggtccaccaggttatccaggggagaaaggtgctcagggt
gtatcaggccgtcccggagcccctggagctccaggtgctaaaggtgattctggtcaaaca
gtctctgagcctggtccaagaggtccccccgggctcccgggtgaacctgggctggcaggt
cgtccaggtgacccaggccaaccagggcagcctggtttacccggactgcaaggaccaaaa
ggggataggggagtgccaggcattggattccctggtccatcaggcccaaaaggtttgcca
ggattaccaggttcaccaggtgctccaggaggtccaggaagaccaggccgtgatgggact
ccaggtcaaccaggaatcccaggaccaaagggagatcctggctttgggtttccaggacca
ccgggtccacctggtccacaggggatcaatgggctgccaggtcctaaaggtgatccagga
attactggattaccaggccaaccagggcgaccaggattagatggcacattcggatcgaaa
ggtgatccaggttttactggccctccaggtcctcctggtccaataggaccccctggatta
ggtggacgaggcgtcccaggtccacaaggcccacctgggcttccaggtcaaccaggtcaa
ccaggattgccaggtcgcattggtgaaaagggagatcctggtcctccagggttagatatc
cctggccctcctggtgagaaaggaaatacaggattcccaggcagtccaggtccagttggc
cctccaggaatacctggtcaaccagcaagggatgggttaccaggtccaccaggtcctaaa
ggtgaaatgggtgtgatgggaacgccaggtcctccgggttctcctggtcctccaggtgct
ccaggtttgctcggtccaaaaggtaatgagggcatcccaggtagacctggaaacccaggc
ggacctggctttaaaggtgacaaaggtgaccctggcctcccaggtgtcccaggaacaatc
gacccgggccagatctttgcaggacagaaaggagagcggggtatcccaggttcaccaggt
cttccaggcgcaaagggtttcacaggattacctggtgatccaggagcaccaggacaagat
ggtttaccaggattgccaggaggtccaggaatcaaaggagactcagggtacccaggacaa
ccaggatctccgggactaccaggaccaaaaggatcaatgggtgaaatgggtcttccaggt
ccaccaggtagtaaaggttctctgggaagtcctggtcgtccaggtcagccaggtactcca
ggtggtccaggcttaaagggtgaaaaaggtgactcaggtattccagaactagggtcccca
ggcccccctggtcaaaagggtgaaccaggtgctcctggtttcccaggtaaccctggaagt
aagggtgttccaggtggccctggtcttcctggattgcctggtgcacctggtcctaaaggt
gattctggccaaccaggattcccaggtacacctggaattcctggtcccaagggaattgat
ggcttcccaggttctcctggccttattggaccacctggtccaccaggtgagccaagtcct
cctggaattccaggtcctccaggagagaaaggacaaccaggccgtgatggtattccaggc
cgagctggtctgaagggagatccaggtgctccaggcctaggacgcccaggagcccctggt
tctccaggaattccaggaccaaaaggagatccgggtgttccaggtaatccaggaggtcca
ggagctccaggtcttaaaggtgatcctggattcccaggattcacaggtcagcaaggccca
ccaggtccccctggcccaccaggacgatcattggagggcccaaaaggttcacccgggtct
ccaggacagcctggaagaccaggtcctccaggtcctcaaggtccacaaggtccaataggt
ccccgaggcccaccaggatttggcggtatcaaaggagaaaaaggcaatcctggtcttcca
ggatcaccagggttccctggtccaaaaggggaaattggaccaccaggaattgcaggtagc
ccaggacaaccaggcttcacaggactgaaaggcgacccaggttcaccaggcctgccaggc
tttccaggaatgaaaggatctcctggatctcccggtgctaagggtttgccaggtgattta
ggcccacctggccctcgaggtctacctggtccacctggaccacaagtaccagctcgaatt
gtcaaaggagaacggggttacccaggaccaccaggtcagcctggcactaaaggattacct
ggtccaattggtctgccagggcctccaggtccagcaggaccccctggtgacccaggtcaa
gatggtattcctgggtttaatggaccaagtggattaaagggtgaaagaggctttccaggg
gatccgggtgacagaggtttttcaggcccacctggtccagatggtactcctggagtgcca
ggccttcctggatctccttctgtagctcatggattcttggttacccgacacagtcagtca
acagatgtgccacgttgtcctcctggaacattaaccatctatgatgggtactctctgctt
tatgtacaagggaatgaaagagcacatggtcaagatttgggaactgctgggagctgtctg
cggcgtttcagtacaatgccatttatgttctgtaacatcaacaacgtctgtaactttgcc
tcaaggaatgactactcctattggctctcaacgcctcagccaatgccaatgagcatggcc
ccagtaaatggggagaacatccgacccttcattagcaggtgcagtgtatgtgaagcccca
gcattagtaatagccattcacagtcagactattcagatcccacaatgtccggagggatgg
agctcactgtggattggatactctttcatgatgcacaccagtgctggtgctgaaggatca
ggccaagctttagcttctcctggttcctgcctggaggaattccgatctgcaccattcatc
gaatgccacggtcgaggcacgtgcaactattatgccaactcgtacagtttctggctagcc
acagttgaaacagtggagatgttcagtaaaccgcagcctgagactctaaaagcgggtgaa
ctccgaacacgtgtgagccgctgtcaagtatgtatgaaaaggacgtaa

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (6)   
   RefSeq(pep) (6)   
DNA sequence (6)   
   RefSeq(nuc) (6)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

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