KEGG   Rhincodon typus (whale shark): 109916901
Entry
109916901         CDS       T06055                                 
Name
(RefSeq) lymphotoxin-alpha-like
  KO
K03156  tumor necrosis factor superfamily, member 2
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp04010  MAPK signaling pathway
rtp04060  Cytokine-cytokine receptor interaction
rtp04150  mTOR signaling pathway
rtp04210  Apoptosis
rtp04217  Necroptosis
rtp04350  TGF-beta signaling pathway
rtp04620  Toll-like receptor signaling pathway
rtp04621  NOD-like receptor signaling pathway
rtp04622  RIG-I-like receptor signaling pathway
rtp04625  C-type lectin receptor signaling pathway
rtp04920  Adipocytokine signaling pathway
rtp05132  Salmonella infection
rtp05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   04010 MAPK signaling pathway
    109916901
   04350 TGF-beta signaling pathway
    109916901
   04150 mTOR signaling pathway
    109916901
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    109916901
 09140 Cellular Processes
  09143 Cell growth and death
   04210 Apoptosis
    109916901
   04217 Necroptosis
    109916901
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    109916901
   04621 NOD-like receptor signaling pathway
    109916901
   04622 RIG-I-like receptor signaling pathway
    109916901
   04625 C-type lectin receptor signaling pathway
    109916901
  09152 Endocrine system
   04920 Adipocytokine signaling pathway
    109916901
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    109916901
  09171 Infectious disease: bacterial
   05132 Salmonella infection
    109916901
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:rtp04052]
    109916901
   00536 Glycosaminoglycan binding proteins [BR:rtp00536]
    109916901
Cytokines and neuropeptides [BR:rtp04052]
 Cytokines
  Tumor necrosis fators
   109916901
Glycosaminoglycan binding proteins [BR:rtp00536]
 Heparan sulfate / Heparin
  Cytokines
   109916901
SSDB
Motif
Pfam: TNF PB2_cap-binding
Other DBs
NCBI-GeneID: 109916901
NCBI-ProteinID: XP_020372246
Position
Unknown
AA seq 235 aa
MSSEQMLSELESGRELASENTQQSARCLKLLSAFAVIALVAGCGYLLFTQGQSSTSSHSN
WKATLRGAEDVSANSGLPHLMKRVGSDPRPRIAAHLTANPIPLVSDKLTWQEQAGIAFSY
GVEFSNNSLLIKKPGFYFIYTQVVFHYDQCEESTIFLSHDVHKLSLAYPEETILLRATKS
VCHHGSHSDPWFKTSYQGAIFEFEAGDRIFSRVSENVVKYLDKTEGKTFFGIFAL
NT seq 708 nt   +upstreamnt  +downstreamnt
atgagcagtgagcagatgctatcagagctggagagtggcagggagctggcctcagagaac
acccagcagagtgcccgctgcctcaaactgctcagcgccttcgctgttattgcccttgtc
gctggttgcggatatctcctgttcactcagggacaatcgtcaacatcaagccattcaaac
tggaaggctacactgagaggcgctgaagatgtgtctgccaacagcggtttgcctcatctc
atgaagcgggtggggagtgacccacggccaagaattgcagctcacctgacagccaatccc
attcccctggtgtccgacaaactgacatggcaggagcaagcgggcatcgcgttctcctac
ggcgttgagttctcaaacaacagcctcctgatcaagaaaccaggcttttacttcatctac
acacaggtggtcttccactacgaccagtgtgaggagagcaccatcttcctgagtcacgat
gttcacaagctctccttggcctatccagaagagaccatcctgctcagggccacaaagtcc
gtctgccaccacggcagccactctgacccctggttcaagacctcctaccagggtgccatc
tttgagtttgaggcaggcgaccggatcttctcacgggtctccgagaatgtggtcaagtac
ttggacaagacggaaggcaagaccttctttggaatctttgccctgtga

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