KEGG   Rhincodon typus (whale shark): 109918357
Entry
109918357         CDS       T06055                                 
Symbol
cxcl12a
Name
(RefSeq) chemokine (C-X-C motif) ligand 12a (stromal cell-derived factor 1)
  KO
K10031  C-X-C motif chemokine 12
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp04060  Cytokine-cytokine receptor interaction
rtp04672  Intestinal immune network for IgA production
rtp04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    109918357 (cxcl12a)
 09140 Cellular Processes
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    109918357 (cxcl12a)
 09150 Organismal Systems
  09151 Immune system
   04672 Intestinal immune network for IgA production
    109918357 (cxcl12a)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:rtp04052]
    109918357 (cxcl12a)
   00536 Glycosaminoglycan binding proteins [BR:rtp00536]
    109918357 (cxcl12a)
Cytokines and neuropeptides [BR:rtp04052]
 Cytokines
  Chemokines
   109918357 (cxcl12a)
Glycosaminoglycan binding proteins [BR:rtp00536]
 Heparan sulfate / Heparin
  Chemokines
   109918357 (cxcl12a)
SSDB
Motif
Pfam: IL8
Other DBs
NCBI-GeneID: 109918357
NCBI-ProteinID: XP_020373863
Position
34:complement(10567941..10575403)
AA seq 91 aa
MIVKTCAVLLLLLGTLCVNLTQGKPTAVLNRCMCRGGATQINVKNIRGLQVIPIPNCPLQ
LIATLKTGKKICLHSKFFYLWERKINRQSKN
NT seq 276 nt   +upstreamnt  +downstreamnt
atgattgtgaaaacgtgtgcagtgttactcctgcttcttggcactctgtgcgtgaacctg
acccaggggaagccaactgcagttctgaacaggtgcatgtgcagaggtggagcaacacag
atcaatgtgaaaaacattaggggattacaggttatccccattccaaactgccccctccaa
ctcatagccacattgaagactgggaagaaaatttgcctgcattccaaatttttttacctt
tgggaaaggaaaataaataggcaaagcaagaactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (13)   

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