KEGG   Rhincodon typus (whale shark): 109922557
Entry
109922557         CDS       T06055                                 
Symbol
chd9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
Organism
rtp  Rhincodon typus (whale shark)
SSDB
Motif
Pfam: SNF2-rel_dom BRK Helicase_C Chromo ResIII HDA2-3 DEAD
Other DBs
NCBI-GeneID: 109922557
NCBI-ProteinID: XP_048461516
Position
15:39748973..40208274
AA seq 2968 aa
MTDPIMDFLDDANLFGGGLEGLADDGFSQAGPVSLVDELNLSADFEPLQVEPLHHVSETQ
TSEKINFEQLQTFDSLKLHPENQSFNLVGTGAETSVLSPHSQFHCSPDHQQNQTNGLFPS
AHNDSSGQSFVDGSPMWGHQSPISNQNGSPFHTLQAHSQSIQPMTPFLTHHDFGLHQSSP
QQQQQTASVQPQQNMNHFTTSQKVLNQGSQFMGAHGSPSSHVTPLGQPTTTVSSSTQQHS
ASVQQFNQPTTTLSMNPVHPVRFTSSANLINVHQNVNFSNSSREMTPCSVNNSNQFTPPY
SYPNNNLANSNNLTSATILSTHQVTQAMTCFPESDTFTVAAGTNQEPVQEMLSPNSPAKQ
KVLQPIHSVNTQGNYSPSGMPSVQTGVPVTSSPSSRVRFGNTSAQRKPTDFSTLQGNPLP
HSQTHSLTRMRTDDFQGQLSAKFGNSGFGQGNSSPISRPVASRQLQQQPSKQQKMGNQQQ
IHQDPATISHTLSQRWQPSITSQHRQTKGSMQLTLQRQPLSSQTTIDGSRPQTTQIVKLQ
NAQLMTGNKQLKKKEMQNKQEKANRIISEAIAKAKARGEQNIPRVVNPACLSTGSARKEE
RKSNKCKTKQKDKESKKSRTGLCSKSKDRTKINKIIISLGKKRKNESSEEGSDTEQVPAP
SIKKEPITGCQKRRSNRQVKRKKYNEDTGMKISDDDDGLTAKGKVKTCAVLPAEQPVQLF
VENPSEEDAAIVDKVMASRLVKKEVAMGHMADVEEFFVKYKNYSYLHCEWATEAQLMKDK
RIHQKVNRFKIKQAQRGHFFAAMDDEPFNPDYVEVDRILECSCCEDTDTGEAVVYYLVKW
CSLPYEDSTWELREDVDQGKIEEFERLQQAKPSLKRMDRPPATAWKKLGQSREYKIGNKL
RDYQLEGVNWLLFNWYNRQNCILADEMGLGKTIQSITFLDEIYLTGIHGPFLIIAPLSTI
ANWEREFRTWTDLNVIVYHGSMISRQMIQQYEMYFRDSEGRILRGTYRFHAMITTFEMIL
GGCPELNVIEWRCVIIDEAHRLKNKNCKLLEGLKIMNLEHKVLLTGTPLQNTVEELFSLL
HFLEPLRFSSETTFMQEFGDLKSEAQVQKLQAILKPMMLRRLKEDVEKKLAPKEETIIEV
ELTNIQKKYYRAILERNFAFLSKGAGQANVPNLVNTMMELRKCCNHPYLIKGAEEKILGE
FREMHNPAAPVFHLQAMIQSSGKLVLIDKLLPKMKAGGHKVLIFSQMVRCLDILEDYLIQ
KRYPYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGGLGINLTAADTCIIFDSDW
NPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDKASLKLGLDKAVLQSMNGRENN
VGGMQQMSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQILMRRTKTITIESEGRGST
FAKASFVASGNRSDIALDDPNFWQKWAKKAEIDLEAVHGRNSLVIDTPRVRKQTRPYNAA
KDELAELSEAESDGEDRPKLRRPYDRCHAYGRTECFRIEKNLLIYGWDRWKDILSHGRFK
RRLVEQDVETICRALLVYCLAHYRGDEKIKSFIWDLITPTEDGQTKELQNHLGLSAPVPR
GRKGKKVKIQGSSFDMQKAEWLRKYNPEHLLQDDGYKKHLKHHCNKVLLRVRMLYYLKQE
VIGDQLEKVLDGVDASEIDIWVPEPEQSEIPAEWWDVDADKSLLIGVFKHGYEKYNTMRN
DPALCFLERVGKPDEKAIAAEQRGNDTFADGAEGYGYSQSTWDGEDPEYKPTQPLFKDEM
EDAASSPGDLIITDGPLGEGDLLYWPTASALTTRLRRLVTAYQRSNKKEQVKLEAQTKGD
RRRRLCADTVKAKEAAKIEKQQRWTRREEADFYRVVSTFGVVYDPDKQKFDWTKFRAIAR
LNKKTDESLQKYLYAFIAMCRRVCRLPHKEKEELPDPPIFIQPITEERASRTLYRIELLR
KVREQVLRHPQLDERLQLCQPGPDLPEWWESGKHDKELLTGAAKHGVSKTDYHIFCDSEL
SFMMAQRNFSQNKATQSRSSTPLLHPQYPSSSSPINLPAKLQDKKSQSETETAKCERTVV
VKKEQSSDDEDAVRTEVKNKVKSEHWNAVGGFQLQNRLDKKTGIKLDPDPDGCMVAARTQ
PLTPNSVHNKRKANRGRPDSSSDSDSDSDNSSSSSPSSSSSSSSSQSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSDDSDSDSDDKQTTAGCKSPQHLKTYDEDSVASLSITHDETQDS
FLPDSGKPDGPFLQERHRFAASCWPKDRVMINRIDSICHAVLKGNWIPSRRSYDYNAVTS
SYTTKLLDSPSAMGNFSDSATVTLGTQGAKEDNSLLSQFTKVKKHVREKEFTVKINDEGG
LKLTFQKQRLSQKRGLEVEEGTSDQQQYMARLHDLYSASDSSQELAVDLSKSLQGAGSSN
SLPSSVLFNSSLPGNTSTVISDPKSAIASTSQQISRHCTNGVLLDGQPMVKKRRGRKKNV
EGVDILFMNRSKSVLPANIELNNRQAALGVSQVRLDADSHVSVINVKNGTRLTGEDAPKR
KDLEEWLKEHPDYVADVSSHVPKIVKTEILGDRPKQKRHRCRNPNKIDVKSLTGEERVPV
INRRNAKKVGGSLAPPIKDLERWLQENPDFGIAPEWATVVKQSGYLPENMFDRILTGPVV
REEVSRRGRRPKSELTKAAAAAMTVNPLVANGLLAGMDLNSLQSLQQNLQNLQSLQLTAG
LMGFPAGLPSAGGDTKSLASMFPMMHSSMAGLPNIFGMGDLLTKPSEMGPKDRNGNSPID
SFKPTDESNERTEKPNMDVGNEISVTSSASSPRKVTPTTSASASATSSGPLAINPLLLSS
MLYPGILLSPGLNIPIPGFPQTNVSDVQTNRNTGVTMPKPTKETVEHKEGTEQNSSHENS
GDDASEKATSSTSEDTTQPDDSDSSEED
NT seq 8907 nt   +upstreamnt  +downstreamnt
atgactgatcctatcatggattttttggatgatgccaacctgtttggtggaggattggaa
ggcttggcagatgatggcttttcgcaagcaggaccagtttcattggttgatgagctaaac
ctcagtgcagattttgaacctttgcaagttgagccattgcatcatgtatcagagacacag
acatcagaaaaaattaactttgaacagctacagacatttgattcactgaaacttcatcca
gagaaccagtcttttaacttggtgggcactggtgctgagactagcgtcctttctccacat
tcccagtttcattgttcaccagaccatcagcaaaatcagacaaatgggctgttcccttct
gcccacaatgatagtagtggccagtcattcgtagacggtagcccaatgtggggccaccaa
agccccatttcaaatcagaatggatcaccattccataccttgcaagcacattcacagtcc
attcagccaatgacccccttcttaacgcatcatgattttggtctgcatcagtctagcccg
cagcagcagcaacaaactgcgtcagtgcagccccaacagaatatgaatcatttcactaca
agtcagaaagttctaaatcaaggcagtcaattcatgggtgcccatggttcaccttcatct
catgtgactccgttgggccaaccgaccacaaccgtaagttcatctactcaacaacattct
gcttcagtgcagcagtttaaccaaccaactacaactctatccatgaatccagtacatcct
gttcgattcaccagtagtgctaatctcatcaatgtacatcagaatgtgaacttttcaaac
tcatcacgagaaatgactccttgttctgttaataattcaaatcagtttactcctccgtat
tcctaccctaataacaacctagctaacagcaacaatttgacatctgctactatcctttca
actcatcaggtaacccaagctatgacttgcttccctgagagtgacacattcacagtggca
gcagggaccaaccaggaaccagttcaagaaatgctcagtcccaacagtcctgctaaacaa
aaggttctccaacctatacattctgtaaacactcagggaaactacagtccttcaggtatg
ccctctgttcaaactggtgtgccagtaacgagcagcccttcttctcgagtgagatttggt
aacacatcagctcaaaggaaaccaactgacttttcaactcttcagggaaatccacttccg
cattctcagacacattcgttgaccaggatgagaacagatgatttccaggggcagctgtca
gcaaagtttggcaattcaggctttggccaagggaattcatcccctatttcaagaccagtg
gcttcacggcagttacagcagcagccaagcaagcaacaaaagatgggtaaccaacagcaa
atacaccaagaccctgctaccattagccacaccctatctcagcgttggcagccatcaata
actagccagcatcggcagacaaagggatccatgcagttgactttgcaacggcagcccctt
tcctctcagaccaccattgatggttctcgtccacaaacaacacaaattgtcaaattacag
aatgcacagttgatgactggaaacaaacaactaaaaaagaaggaaatgcagaacaagcaa
gaaaaagctaatcgcatcatatcggaagcaattgctaaggctaaagcacgtggggaacag
aatattccccgagtggtaaacccagcctgtttatccaccgggtctgctcgaaaggaagaa
aggaaatccaacaagtgcaaaacaaaacaaaaagataaagagtcaaaaaaatctagaact
ggcttatgttctaaatcaaaggatagaacaaaaataaacaaaatcataatatcgcttggg
aaaaaaagaaagaatgaatcatcagaagagggctcagatactgaacaggttcctgcacca
tcaataaagaaagaacccatcactggatgtcaaaagagacgatcgaacagacaagtgaaa
agaaagaaatataacgaagacactggaatgaagatttcagatgatgatgatgggttaact
gctaaagggaaagtcaagacttgtgctgttctacctgctgagcaacctgtgcagttattt
gtggaaaaccctagtgaagaagatgctgccattgttgacaaagttatggcctcgagatta
gtgaaaaaagaggtagccatgggacatatggctgatgttgaagagttctttgtaaaatac
aaaaattactcctaccttcattgtgaatgggccacagaagcacagctaatgaaagacaaa
aggatacatcaaaaagtgaaccgcttcaagattaaacaggcacagagaggccattttttt
gcagcaatggatgatgagccttttaatccagactacgttgaagtggatagaatattggaa
tgctcgtgttgtgaggacacagacactggtgaggcagttgtttattatttggttaaatgg
tgttcgttgccatatgaggatagtacgtgggagcttagagaagatgtagatcaaggcaag
attgaggagtttgaacgactgcagcaagcaaagccttccctgaagcgcatggaccgtcct
cccgccactgcttggaagaaacttggacaatccagggaatacaagatcggtaataaactc
agggactaccaattagaaggtgtcaattggctccttttcaactggtataataggcaaaac
tgcattcttgctgatgaaatgggtttaggcaagaccatccaatctattacattccttgat
gaaatttatctgactggaatccatggtccttttctcattattgcgcctttgtctacaatt
gcaaattgggaaagggaatttcgcacatggacagacctgaacgtcatcgtttaccatggc
agtatgattagcagacagatgattcaacagtatgaaatgtacttccgggactcagagggc
cggattcttcggggaacctacaggttccatgccatgataactacttttgagatgatcctg
ggtggttgtccggagctgaatgtaattgaatggcgatgtgtcatcattgatgaggctcac
agactgaagaataaaaattgcaagctactggagggattgaaaattatgaatctggaacac
aaggtcctgctgacaggaactcctctgcagaacactgtggaggagttgttcagtttgctt
catttcttggaacccctacgtttctcatcagaaaccaccttcatgcaggaatttggagac
ctaaagagtgaagcacaggtgcagaagcttcaggcaatattgaagccaatgatgctgcga
cgcctaaaggaggatgtggaaaagaagcttgctcctaaagaagagacaattattgaagta
gaattaaccaacattcagaaaaaatactatcgtgcaatcctggaacgaaactttgccttt
ctatctaaaggggctggtcaggcaaatgttcctaacctggtaaataccatgatggagctc
aggaaatgctgtaatcacccatatctgataaaaggtgctgaagaaaagattctgggagag
ttcagagagatgcacaatccagctgctccagtcttccatctgcaagctatgattcagtca
tctggtaaactcgtcttaattgacaagctgctcccaaagatgaaagctggtggtcacaaa
gttctcatcttctcccagatggtgcgctgccttgacatacttgaggactaccttattcaa
aaaaggtatccatatgagcgtattgatgggagagttcgaggaaacttacgacaagcagca
attgaccgatttagcaagcctgactctgatcgctttgtattcttgctgtgtacaagagct
ggtggtttaggtatcaatctaacagcagcagatacttgtatcatatttgattctgactgg
aatccacagaatgaccttcaggctcaagctcgatgtcacaggattggtcagaacaaagct
gtgaaagtttatagactaataactcggaattcatatgaacgggagatgtttgacaaggcg
agtctgaagttgggacttgacaaagctgtgctgcagagtatgaatggccgagaaaacaat
gttggtgggatgcagcaaatgtcgaagaaagaaattgaagacttgcttcgccgtggtgcc
tatggtgcaataatggatgaagaagacgagggttctaaattttgtgaggaggacattgat
cagattctcatgcgacggacaaagacaattaccattgaatcagaaggaagaggttccaca
tttgctaaggcaagttttgtggcatcaggcaacagaagtgacattgctttggatgatcct
aacttctggcagaaatgggcaaagaaagctgaaattgatcttgaagccgtacatggaagg
aacagcttagttattgacacaccaagagtaaggaaacaaaccagaccttacaatgctgct
aaagatgagctggcagaattatcagaggcagagagtgatggggaagacagacccaaacta
cgcagaccttatgaccgatgtcacgcatatggaagaacagagtgtttcagaattgagaag
aacctgctaatttatgggtgggatcgctggaaagacattctatcacatgggcggtttaag
agacgactggtggaacaggatgtggagacaatctgtcgtgcactcttagtatattgcctt
gctcactacagaggagatgaaaagattaagagtttcatctgggatctcattaccccgaca
gaagatggacagacgaaagaactgcaaaaccacctagggttgtctgcaccagttccaagg
ggcaggaaaggaaagaaagtgaagatacaaggaagctcgtttgatatgcagaaggctgag
tggcttaggaaatacaacccagaacacctgctccaagatgatggctacaaaaagcattta
aaacatcactgcaataaggtactactgcgcgtaagaatgttgtattatctgaagcaagaa
gtaattggtgaccagttggaaaaagtacttgatggagtggatgcgagtgaaattgacatt
tgggttcctgagcctgagcagtctgaaatacctgctgaatggtgggatgtggatgctgac
aaatcactgctcatcggggtcttcaagcacggttatgaaaagtataatacaatgagaaat
gaccctgcactctgtttcttagaaagagttggcaaacctgatgagaaagccattgctgca
gagcagaggggaaatgatacttttgcagacggtgcagaggggtatggttattctcaatca
acatgggatggtgaagatccagaatataaaccaactcagccattattcaaggatgaaatg
gaggatgctgcatcttctccaggagatctaataattacagatggccctctgggagaaggt
gatctgctgtattggccaactgcatctgctttaacaacacgccttcgtcgacttgtgacc
gcttatcagcgtagtaacaagaaagagcaggtcaaactggaagcccaaactaaaggagat
aggagaaggcgactttgtgctgacactgtaaaagccaaggaggccgctaaaatcgaaaag
caacaaaggtggaccaggcgagaagaggctgatttttacagagtcgtgtctacttttggt
gtggtttatgatccagacaagcaaaaatttgattggactaaattccgagctattgccagg
ttgaataagaagacagatgagagtctgcagaagtatctttatgctttcatcgctatgtgt
cgaagagtttgccgtttaccacacaaagagaaagaagagcttcctgatccacccattttc
atacagcctattacagaggagcgtgcttccaggacactatatcggattgagctgctccgt
aaagtacgggaacaagtacttcgacatcctcaacttgacgaacggttacagttgtgccag
ccaggcccagatctgccagagtggtgggagagtggaaagcatgataaggaattgctcact
ggagcagctaaacatggtgtcagcaagactgattatcacattttctgtgattcagagctt
tccttcatgatggctcaaagaaacttcagccaaaacaaagctacacaatctaggagctcc
acaccactcttgcaccctcagtatccatcttcatcctcacctattaatttaccagctaag
ctacaggacaaaaaaagtcagtctgagactgaaactgcaaagtgtgaaagaacagtagtt
gtaaaaaaggaacaatcatctgatgatgaagatgcagtgcgcactgaggttaagaataaa
gtgaaatcagaacactggaatgctgtgggtggttttcagctacaaaaccgattagacaag
aagactggcattaaattagacccagatccagatggatgtatggttgcagcacggactcaa
ccccttacaccgaactctgtacacaacaaacgaaaggcgaacagaggacgtcctgattcg
agctctgattcagattctgattcagataattcttcttcatcttcaccgtcgtcgtcatcc
tcgtcatcctcgtcacaatcctcatcttcctcctcatcttcgtcgtcatcctcttcgtcc
tcatcatcctcttcatcttcctcctcctcgtcttcctcatcgtcctcttctgatgacagt
gatagtgacagtgatgataagcagaccacagcaggttgcaaatccccacagcacttgaaa
acttatgatgaagatagtgtagcatctcttagcatcacacatgatgagacacaagacagc
tttctaccagatagtggaaagcctgatggtcccttcctccaagaaagacataggtttgct
gcctcctgctggccaaaggatcgtgtcatgatcaacagaattgatagtatatgccatgca
gtgttgaaaggaaattggattccatcaagaaggagttatgattacaatgctgtgacctct
tcttacacaacaaaactgctcgatagcccttctgccatgggaaatttcagtgattctgct
actgtaacattgggaacccagggtgctaaagaagataattctcttttgtcgcagttcaca
aaggtgaagaagcatgtgcgagaaaaggagtttacagtgaaaatcaatgacgaaggtgga
ttgaagttaacttttcagaaacaaaggctcagtcagaagagaggacttgaggttgaagaa
ggaacttcagatcaacagcaatacatggcacggctgcatgatttgtattctgcgtctgac
agcagccaggagttggctgtggacctttccaaatctttacagggagctgggagctccaac
tctttgccatcgtcagtgttattcaattcaagtttgcctggcaacacctccacagtgatc
tctgatcctaaatcagcaatagccagtacttcacagcagatatcacggcactgtacaaat
ggggtcctattggatggccagccaatggttaaaaagagaagaggacggaaaaaaaatgta
gaaggagtagacatcctcttcatgaacagaagcaaatcagtactacctgctaatattgag
ttaaacaacagacaggcagctctcggcgtatcccaagtacgacttgatgctgatagtcat
gtttcagttattaatgtgaaaaatggcacaagactcacaggagaggatgctccaaaaaga
aaggatttagaagagtggctcaaggaacacccagactatgtggcagatgtgtcatcacat
gttccaaaaattgttaaaactgagattttgggtgatagaccaaagcaaaaaagacatcga
tgcagaaaccctaacaaaatagatgtcaaaagtctgactggagaagaacgtgtacctgtt
ataaatagacgaaatgccaaaaaggtgggtggctcactggctcctccaattaaagacttg
gagaggtggctgcaggaaaatccagattttgggattgctccagaatgggcaactgtagta
aagcagtcagggtatttaccggaaaatatgtttgaccgcatcctcacgggtcctgtcgtg
cgagaagaggttagtcgaaggggtagacgtccaaaaagtgagctcaccaaagctgctgct
gcagctatgactgttaaccccttagtcgccaatggccttcttgcaggaatggacttaaac
agcctccaaagcttgcaacagaatctccagaatttacagtctttacaattgacagctgga
ttgatgggatttcctgcaggccttccatctgcaggtggagacacaaaatccctggcttcc
atgtttcctatgatgcattctagtatggcagggttaccaaatatttttggtatgggagat
ttactaactaaaccttcagagatgggtcccaaggaccggaatggaaatagccctatagat
tccttcaagccaacagatgagtcaaatgaaaggacagagaaaccaaacatggatgttggt
aatgaaatctcagtgacaagttctgcgtcttcgcctaggaaggttacaccaaccacaagt
gcttctgcctcagcaacatccagtggtcctctggctattaatccactgctattgtccagt
atgctttatccaggcattctactctctccaggccttaacatacctattccaggattccct
cagactaatgtctctgatgtacagactaatagaaatacaggtgtaaccatgcccaagcct
acaaaggaaacagtagaacataaagagggaacagaacagaattcttcacatgaaaacagt
ggagatgatgcatctgagaaagcaacatcgtctactagtgaagatacaactcaaccagat
gattcggattccagtgaagaagactga

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (5)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (6)   
   Pfam (6)   
All databases (19)   

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