KEGG   Rhincodon typus (whale shark): 109922978
Entry
109922978         CDS       T06055                                 
Name
(RefSeq) LOW QUALITY PROTEIN: C-myc promoter-binding protein-like
  KO
K20163  DENN domain-containing protein 4
Organism
rtp  Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rtp04131]
    109922978
Membrane trafficking [BR:rtp04131]
 Protein recycling
  Rab GTPases and associated proteins
   Other Rab GTPase associated proteins
    109922978
SSDB
Motif
Pfam: DENN dDENN uDENN PPR_2 PPR_3 PPR_long PPR CA109-like
Other DBs
NCBI-GeneID: 109922978
NCBI-ProteinID: XP_020378607
Position
Unknown
AA seq 1642 aa
MENKKKAEERNRYFVSVFMMEDIISIQELRESGRRGSRPGLSLLSFRDQTRVLYEWKERL
KHGCQIIQTTPYGRPANISGGTSSQRIYITYRRASENMAQNSLAVTDICIIIPSKGETPP
HTFCRVDKNLNSSMWGSAVYLCYKKSLAKTNSIAYKAGLICRYPEEDYESFPLPSSVPLF
CLPMGATIECWPCNTKYPLPVFSTFVLTAASATKVYGAAIQFYEALPQENLTDKQRSQLG
LVSAADRKPILSKTAHTSKCICLLSHWPFFEAFRKFLTFLYRYSISGPHALPIEKHISHF
MHNVPFPSPQRPRILVQQSPHDYLMLCQPVSSPLPLSGGSFTTLLQNLGPEKAISLLLYA
LTEHKILIHSVRPAVLTSVAEAVVSMIFPFHWPCPYIPLCPLALADVLSAPCPFIVGVDS
RYFDLYDPPSDVSCVDLDTNTISQTDDRKNLTWKLLPKKACKNLINSLSSIYEQLAEMHQ
RPRDEALMELSINDHDFNFGKRMQVLEIEIQEAFLQFMASILKGYRTYLQPITEAPSEKA
TDASSLFDLQGFLKSRDRSHQKFYSLMTKTQMFIRFIEECSFVSDKDASLAFFDDCVDKL
DAERPDDLHLIELDESHRSEHTVFITPPDLPSLPSGEEYPLQYSYSSFPVLTPELFDRPV
GLLKTPASRLTSKNSCPSSPAPMGRRTKQEIKSAQKIAKRYSSIPQMWSKCLLRHCYGLW
FICLPAYVKVCHSKVRALRTAYDVLRKMQVKKLEPPDEVCYRVLMQLCGQYGQPVLAVKV
LFEMKKAGVHPNAITYGYYNKAVLESTWPSSNRGGYFLWMKIRNVVLAIAHFRRVLKRAP
ANPPQTPVLSDGSDLDAVSHGSMDSSNDPSTAEQPQFNSELMKVDSTDDRSSTARLGSSL
NYGYDSQDSLYEKVPFLSLWISSELMDDHMFSGGQSDLGYNSLSKEEVRRGDISSAHGSE
QPSVGQPMDKDGKKESDSSSLSENESAKGSGDCLSQLDFQGTRSDLTSMTSIVKMNCSFE
TANPNQTNAENSENMAGLLFTASFDSAAYPDPRLGHGSSLRKRHKTAVEPGLKQQMVWGS
RNRNLSGDTFAGLRMHRGSIDTDPRGIADKLGADAKILSTALQMVTRPNTLEISKPRHMH
KPVSLNPEKELSDEDTPYDLNETLANVEEDKTDSPAIFDLEDLDSEPDNAVSSGHPNHKL
KQGLQSKQLQRSMSAGAGIKPAERRGVQRGYDPLSLLLAETSQEKEEEEEDEDYDKCPST
ISARRNLAEEIEMYMDSMSSPLTSRTPSMDFSKTDDDSKTPSHIKGLPAVKGSRRSSLPV
GSPRAKGLCRSRTFQPHGKGEFTGKQRDRLWSSPSFSPSSNRRVEIRETGGVLTLMSPPP
SKLDSLLPPTFDVLKHSMFSAGKGVAEKASKWYTKLTTLAVPIKDNGKEHYSERNSVSSV
GVMDPDASSLDEVTYDDSDGVASPPAYSTPADDTKGWQQASLESSGNDEGTPRQPLQVGS
AQSTSFNFPLPDKSDVGSSQYTSSTSIFQNYAVEILISSCSRCRTCDSLVYDEEIMAGWT
ADDSNLNTTCPFCGNLFLPFLGIEIRDLRGPGRYFLKSSPSTESMQSLQSGPSYPGTKDL
MVSPPGLGMIDVNKPHSPRITV
NT seq 4926 nt   +upstreamnt  +downstreamnt
atggagaacaaaaaaaaggcagaggaacggaataggtactttgtatcagtgttcatgatg
gaagacattattagcatacaagaacttcgagagtcaggaagaaggggtagtcgtccaggc
ctgagtttgctcagcttccgagatcagacaagagttttatatgaatggaaagagaggcta
aagcatggatgtcagatcattcaaaccacgccttacggccgacctgctaatatcagtggc
ggaacttcatctcaacgaatctacataacatatcgtcgtgcatcagaaaacatggcccag
aattccttggctgtcactgatatttgtataattatcccgagtaaaggggagactccaccg
cacactttctgcagggtggacaaaaacctaaacagcagcatgtgggggtcagcagtatat
ttgtgttacaagaagtccttggccaagaccaacagtatagcatacaaagctggtttgata
tgtaggtatccagaggaagactatgaatcctttccgttgccttcatcagtacctctattt
tgcttgccaatgggagcaaccattgaatgttggccttgtaataccaaatatccgctccct
gtcttctctacatttgtgcttacagcagcttctgcaacaaaggtttatggtgcagctatt
cagttctatgaagctcttcctcaagagaatctaacagacaagcaacgatcccaactaggg
ctggtcagtgctgccgaccgaaaacccatcctctcaaaaacagctcacaccagcaaatgc
atctgccttctgtcgcattggccgttcttcgaagcttttcgaaaatttctcacatttttg
taccgttattcaatctctgggcctcatgcactacccattgagaagcacatcagtcatttc
atgcataatgtcccatttccttctcctcaaaggcctaggattcttgtgcagcaatcaccg
catgactatctgatgctttgccaacctgtatcatcgccattacctttgagtggtggcagt
ttcactactttgttgcagaacctgggcccagagaaagcaataagtctgctattgtatgca
ctaaccgaacacaagattcttattcactctgtccgaccggctgtgttaactagtgtggct
gaagcggtcgtttctatgatatttccattccattggccatgcccatacattcctctctgt
ccattggctctggcagatgtccttagtgccccttgccctttcatcgtaggagttgactct
cgctactttgacctgtatgatcctccaagtgatgtaagctgtgtggacctggacactaac
accatctctcaaactgatgatagaaaaaacctgacgtggaaactgcttcctaagaaagct
tgtaaaaatctgatcaactctttgagcagcatttatgagcagctagcagagatgcatcaa
agacccagagacgaagctttaatggagttatcaataaatgatcatgatttcaactttggt
aagaggatgcaggtactggagatagagatacaagaagctttcctgcaattcatggcttcg
atactgaagggttacagaacttatcttcaacccatcacagaggctccctctgagaaagca
acagatgcaagctcactgtttgatcttcaaggtttcctcaagagtcgggaccgttctcac
cagaagttttactcattgatgactaaaacacagatgtttattcgattcattgaggaatgt
tccttcgtgagtgacaaggatgcaagtctggctttctttgatgattgtgtggacaaattg
gacgcagagcgccccgacgatttgcatctcatagaattggatgagtctcacagaagcgaa
catacggttttcataacacctcctgatcttccaagcttgccgagtggagaagagtatccc
cttcaatatagttactctagcttccctgtgctaacaccagaactgtttgacagaccagtg
ggtttattaaaaactccagcaagcaggttaacttcaaaaaatagttgtcccagcagtcca
gcacccatgggcagaagaactaagcaggaaataaaatcagctcaaaaaattgcaaagcgt
tattcatcaattcctcagatgtggtcaaaatgtctcttgcgccattgctatggcctctgg
ttcatctgcctccctgcttatgtgaaagtttgccattcaaaagttagggctcttcggact
gcgtacgatgtgttgaggaagatgcaagttaagaagttggagccacctgatgaggtgtgt
taccgtgttctgatgcagttatgtgggcagtacgggcagccagtgctagctgtgaaagtt
ctgtttgagatgaagaaagcaggggttcaccccaatgctataacatatggttactacaat
aaggctgttttagagagtacatggccatcaagcaacagaggcggctattttctgtggatg
aagataagaaatgttgtgctcgcaatagctcatttccgcagagttttgaaaagggctcca
gcaaacccgccacaaactcctgtgctctcggatggcagtgacttggatgctgtcagccac
ggcagcatggatagctctaatgaccctagcactgcggaacaaccccagttcaactctgag
ctaatgaaagtagattccactgatgatagatctagtacagctaggcttggctctagcttg
aactatggatatgacagtcaggattccttgtatgaaaaggtcccgtttctctctctctgg
atttcctcagaactgatggatgatcatatgttttcaggtgggcaatcagatcttggwtat
aactccttatcaaaagaagaagttaggcgaggagacatatcttcagcacatggatctgag
cagccttcagtggggcaaccaatggataaggatgggaaaaaagagagtgactccagttca
ttgtctgagaatgaaagtgcaaagggcagtggggattgtctgtcccaattggattttcaa
ggaaccagaagtgacttaacatctatgactagcatcgtaaagatgaactgcagctttgaa
actgccaatccaaaccagaccaatgcagaaaacagtgaaaatatggcaggcttgctgttt
actgcatccttcgatagtgctgcatatcctgatcctcgactaggtcatggcagcagtttg
cgcaagagacacaagaccgctgtggaacctggcttgaagcaacaaatggtgtggggcagc
agaaaccgcaatcttagtggtgatacttttgcaggacttaggatgcacagaggaagcata
gacactgaccccaggggaattgcggacaaattgggtgctgatgctaaaatactttcgaca
gctttacaaatggtcacaagaccaaacacactcgagatcagcaaacccagacatatgcat
aaaccggtcagcttgaatccagaaaaggagctgagtgatgaagacacaccgtatgatctg
aatgaaacattggccaatgtagaggaagataaaacagattctcctgccatctttgactta
gaagatctggacagtgaacctgataatgcagtgtctagtgggcatcctaaccataaactg
aaacaagggctgcaatccaagcaattgcagaggagtatgagtgcaggagcagggatcaaa
ccagcagaaagaaggggggttcaaagaggctatgacccactttctcttctgcttgcagaa
accagtcaagagaaagaggaggaggaagaggatgaagactacgacaaatgtccctctact
atttcagctcgccgaaaccttgctgaagagatagaaatgtacatggactccatgagtagt
cctttaactagtcgcacacctagcatggatttctcaaaaacagatgacgatagcaaaaca
ccatctcatatcaaaggcttacctgcagtcaagggatccaggaggtctagccttccagtg
ggctcacccagagcaaaaggactctgtcgatccagaacgtttcaaccacatggaaagggc
gagtttactggcaagcaaagagacagactctggtcctcaccatcattctctccaagtagc
aacaggagagtggaaattcgagagacaggtggagttttgactcttatgtctccacctcct
tctaaactggattcattgctaccacccacctttgacgtgctaaaacatagcatgttctct
gctgggaagggagtggcagaaaaggcaagcaaatggtacaccaaattgacaacattggct
gtacctatcaaagataatggcaaggagcattattctgagagaaatagtgtctcttcagtt
ggagtaatggatcctgatgcatcatctttagatgaggtgacatatgatgactcagacgga
gtagcttcacctccagcctatagcacgcctgcagacgacaccaaaggatggcagcaggct
agtttggagagctctggaaaygacgaggggacacctaggcagccattgcaagttggcagc
gctcagtcaacaagtttcaactttcctttaccagacaaatctgatgtaggatcctctcaa
tatacaagcagcaccagtatcttccagaattatgccgtagagattcttatctccagctgt
tcacgttgtcgaacttgtgactcactagtgtatgacgaggaaataatggctggctggaca
gcagatgactccaacctcaacacgacatgccctttctgcggcaacttgttccttcctttc
cttggcattgaaattcgagatctgcgaggtcctggcaggtattttctgaaatcgagtccg
tctacagaaagtatgcagagtttgcaatctggaccatcctatccgggaacaaaggacctg
atggtctccccgcctggtctgggtatgatcgatgtcaacaagcctcactcaccaagaatt
acagtg

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