KEGG   Rhincodon typus (whale shark): 109923752
Entry
109923752         CDS       T06055                                 
Symbol
vps36
Name
(RefSeq) vacuolar protein-sorting-associated protein 36 isoform X2
  KO
K12190  ESCRT-II complex subunit VPS36
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    109923752 (vps36)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:rtp04131]
    109923752 (vps36)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:rtp04147]
    109923752 (vps36)
Membrane trafficking [BR:rtp04131]
 Endosome - Lysosome transport
  Endosomal sorting complexes required for transport (ESCRT)
   ESCRT-II complex
    109923752 (vps36)
Exosome [BR:rtp04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   109923752 (vps36)
  Exosomal proteins of colorectal cancer cells
   109923752 (vps36)
SSDB
Motif
Pfam: EAP30 Vps36_ESCRT-II DUF1351 TssO
Other DBs
NCBI-GeneID: 109923752
NCBI-ProteinID: XP_020379388
Position
6:23646476..23697592
AA seq 386 aa
MDRFVWASGLLEINETLVIQQRGVRLYDGDDKAKFDLGTLLLSTHRLLWRDHKKHDCCIA
LSLSQIIFFEEQAAGIGKSAKIVVHLQPVSPNKEPGPYQSSKYSYIKLSFKEHGQIEFYR
RLSEELSQKRWERISVSQPMQSPSRSQAGKVRAAGIVGIERKLEEKRKETDKNISEAFED
LSQLMKKAKEMVDLSKLIANKIKDKQGDISEDETIRFKSYLLSMGIANPVTRETHGSGTH
YHMQLAKQLVEMLQVPVEEQGGMMALTEVYCLTNRARGMELLSPEDLVNACKMFEALNLP
MRLRIFDSGVMVVQLQSHNEDEMIASAVETVSEKGFISSEEYAKLMGISVLLAKERLLLA
EKVGHLCRDDSVESLRFYPNLFLTED
NT seq 1161 nt   +upstreamnt  +downstreamnt
atggatcggttcgtgtgggcgagcggactcttggagattaacgagaccctggtgatacag
cagcgcggagtccgcttgtacgacggtgatgacaaggcaaaatttgacttagggacactt
cttcttagtacacacagactgctatggagagaccataaaaagcatgattgctgcatcgct
ttatctttgtcacagatcattttctttgaggaacaggcagctggaataggaaaaagtgcc
aaaatagtagttcatcttcaaccggtttctcccaacaaagagcctggcccatatcaaagt
agcaaatactcttacatcaagttgtctttcaaggaacatggacagattgagttttataga
cgattatcagaagaattgtctcaaaagcgatgggagcgaatttcagtatctcaaccgatg
cagtcacccagtagatcacaagcaggaaaagtgagggctgctggaattgtgggtattgaa
aggaagttggaggaaaaacgaaaggagaccgacaaaaacatctctgaagcttttgaagat
ctcagtcaacttatgaaaaaggccaaagagatggtcgatttgtcaaaattaatagcaaac
aaaatcaaagataagcaaggtgatatttctgaagatgagactatccgtttcaagtcctat
ttgctgagcatgggcatagctaatccagttactagagaaacacatggatctggaacacat
taccacatgcaattggctaaacagctggtggaaatgttgcaagtgccagttgaggaacaa
ggtggaatgatggcactgacagaggtttattgcttgacaaaccgagctcgagggatggag
cttctttcaccagaagatttggtgaatgcttgcaaaatgtttgaggccctgaatctacca
atgaggttacgtatttttgatagtggagtgatggtggttcagttacagtcccacaatgag
gatgaaatgattgcttcagctgtggagacagtatcagagaaaggttttattagttctgag
gagtatgctaagcttatgggaatttctgtactcctggccaaagaaaggctactactagca
gagaaagttggccacctgtgtcgtgatgactctgttgaaagcttgcgattttacccgaat
ttgtttctgacggaagactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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