KEGG   Rhincodon typus (whale shark): 109927978
Entry
109927978         CDS       T06055                                 
Symbol
polb
Name
(RefSeq) DNA polymerase beta
  KO
K02330  DNA polymerase beta [EC:2.7.7.7 4.2.99.-]
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    109927978 (polb)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rtp03400]
    109927978 (polb)
Enzymes [BR:rtp01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     109927978 (polb)
DNA repair and recombination proteins [BR:rtp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     109927978 (polb)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    X-family DNA polymerases
     109927978 (polb)
SSDB
Motif
Pfam: DNA_pol_B_palm DNA_pol_B_thumb HHH_8 DNA_pol_lambd_f HHH_5 NTP_transf_2 HHH_2 Cdd1
Other DBs
NCBI-GeneID: 109927978
NCBI-ProteinID: XP_020383582
Position
40:2128879..2232967
AA seq 335 aa
MSKRKAPQETLNEGITDFLIELANFERNVNRAMHKYNAYRKAASVIAKYPTKIKSGAEAK
KLEGVGDRIAKKIDEFLATGKLQKLEKIRQDDTSASINFLTRVTGIGPAAARKFVEEGIK
TLDDLRENEHILNYHQRIGLKYFEDFEKRIPRCEMVKMQAIVLREVEKLDPNYVAIICGS
FRRGAESSGDMDILLTHPDYTSESLKKPKLLNPVVECLEAINFVTNTLSKGDAKFMGVCR
LPDDSDGSDYPFRRIDIRLIPKDQYFCGVLYFTGSDLFNKNMRTQALEKGFTLNEYTIRP
LGSTGVPGEPLPVESEKDIFDYIDWQYREPQERSE
NT seq 1008 nt   +upstreamnt  +downstreamnt
atgagcaagaggaaagcaccgcaagagacgctcaatgaggggatcaccgatttcctaatc
gagttggctaacttcgagaggaatgtgaaccgagcaatgcacaagtacaacgcatacagg
aaagcagcttcagttattgcaaaatatccaacaaaaatcaagagtggtgcagaagccaaa
aagctggaaggagttggtgacaggattgcaaagaagattgatgaatttctagcaacaggg
aaactgcaaaaattagaaaagattcgtcaagatgataccagtgcatcgattaacttttta
acaagagtgactggaataggaccagcagcagcaagaaaatttgttgaagagggaatcaaa
accctagatgatctcagagaaaatgaacacatactaaattatcatcagcggattggtttg
aagtattttgaggattttgaaaagcgcattcctcgatgtgaaatggtgaaaatgcaggcc
attgttttacgggaagtggagaaactggatccaaactatgttgccatcatttgcggcagt
tttagacgaggtgctgaatccagtggtgatatggatattcttttgactcatcctgactac
acttcagaatcattaaaaaagccaaaacttctcaatccagttgtggaatgcctggaagcg
ataaattttgtcacaaacacgctttccaaaggagatgccaaattcatgggtgtttgccga
ttgccagatgatagtgatggtagtgattatccattcaggagaattgacattaggctaatt
ccaaaagatcagtatttctgcggtgtgctttatttcactggcagtgatctttttaacaag
aacatgaggacccaagcactagaaaaaggcttcacattgaatgagtacacaattcgccct
ttgggaagcacaggagtgccaggagaaccactgcctgttgaaagtgaaaaggacatcttt
gattacattgactggcaataccgagagccacaagagcgaagtgagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (19)   

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