KEGG   Rhincodon typus (whale shark): 109934147
Entry
109934147         CDS       T06055                                 
Symbol
vcpip1
Name
(RefSeq) deubiquitinating protein VCPIP1
  KO
K11861  deubiquitinating protein VCIP135 [EC:3.4.19.12]
Organism
rtp  Rhincodon typus (whale shark)
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01002 Peptidases and inhibitors [BR:rtp01002]
    109934147 (vcpip1)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:rtp04121]
    109934147 (vcpip1)
Enzymes [BR:rtp01000]
 3. Hydrolases
  3.4  Acting on peptide bonds (peptidases)
   3.4.19  Omega peptidases
    3.4.19.12  ubiquitinyl hydrolase 1
     109934147 (vcpip1)
Peptidases and inhibitors [BR:rtp01002]
 Cysteine peptidases
  Family C64
   109934147 (vcpip1)
Ubiquitin system [BR:rtp04121]
 Deubiquitinating enzyme (DUB)
  Ubiquitin-specific proteases (UBPs)
   OTU
    109934147 (vcpip1)
SSDB
Motif
Pfam: VCIP135_N OTU OTU1_UBXL ubiquitin
Other DBs
NCBI-GeneID: 109934147
NCBI-ProteinID: XP_048451852
Position
4:29170711..29202174
AA seq 1204 aa
MLQGSKKKDKRILSGTCPDPKCQARLFFPAYGVSIECTECGQRHEQRNLVNIEEVTDPDV
VLHNLLRNALLGVTAPKKGTEMVKVMGLSNYHCKLLSPILTRYGMDKQTGKAKLLKAMNQ
GEMFDCALLGDRAFLIDPEHIATMGYGKDRSGSLLYLHDTLEEIKKANSNQERLIPVHVD
GDGHCLVHAVSRALVGRELFWHALRENLKQHFKVNLDRYKALFHDFIDAAEWEDIINECD
PLFVPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSCGDYSATFLPGLVPEEKCWG
KDGQLNKPICIAWSSSGRNHYIPLVGIKKGPLPRLPLKLLPKAWGVPQELIRKYIKFEDD
KCILGGDRSLQDKYLQRLVAAMEEIFLKTHDIHPSLVADVHQYIYRRTGVIGIQPEDVTE
AAKKAVIENRLQKCLICGALSELHVPTEWLAPGGKLYNLATSTYGQLKPDKNYSFPVNHL
VCSYDPKEDVLVPDYNLSHLTSCNWCHGTSMRHVRGDGSVVYLDGDRTNTRSAGGKCGCG
YKHFWEGKEYDNLPEAFPITLEWNGRIVRETVYWFQYESDVALNSNVYDVAMKLVTKHFP
GEFGSEILIQKVVNTILHHTAKKNPDEYTPVTVEGAHSRRVGDLQDEPASEPHLPTKIIL
MGQKSKTLHKEELNMSKIERGIQQNITDHAATVQKRKTDKLRQDLKVPGQPPSPGIVKDG
SSSAPATPIKSPYSTSPSKVKKIRVTTSDGRQATLTLQASVTFSEFQESIAKEFSLPPRL
QCIRHGFPLKELHPPKVGWENEVLPLQHGDCVSVEILKDSKESVPAASTSAAHSWKTEEP
EASGRASVKETQEHIDLEMSSLCLLATLMGEDVWSYAKKLPHLFEQGGVFYNTMKKDVGL
ADGKHFTLPHLPGKTFVYNGTNDRLELCIDPAGHIPIGPNIDSLIKEALSQLRSEGGSRS
REGSPSSHGGMKLGSGGVVRKKSEQMPNVTAFQGKGHSLGTASSSPQLEQRHSREIQVPR
KQSTGSSSGTDLSYGIGQSSPKHGASPPKSSSGNSQPVRMAPGFVTMRDGRQLDANLIEA
QRKKLQEMVSSIQASMDKHMKDQNVEQLINSDAPDSKLHSTTSSAQLIMRTESLQTDALE
TPSITSQEGDNENLSMETTAVGVELSSHPSVPSSKAQNGNLLNEDLEEMDSQEIEGTIEP
MDHS
NT seq 3615 nt   +upstreamnt  +downstreamnt
atgttgcaaggatctaagaaaaaagacaaacgtattctgtccggtacgtgtccggatccc
aagtgccaggctcgactgtttttcccagcctacggagtcagtatagaatgcactgaatgc
ggccagcgccatgaacaaagaaatctagtcaatattgaggaagtcaccgacccagacgtg
gtactgcacaacctgctgaggaatgctttgctgggagtcaccgcccccaaaaagggcacg
gaaatggtgaaagtgatggggctgtccaattatcactgtaaactactgtctcccattctg
acccggtacggcatggataagcaaactgggaaggccaagctcttgaaggcgatgaaccaa
ggggaaatgtttgattgtgccctgttgggtgacagagctttccttattgatccagagcac
attgcgactatgggctacggaaaagaccgttcaggaagtctcttatacctccatgatacc
cttgaggaaatcaagaaggcaaatagtaatcaagaacgtttaatccctgtacacgttgat
ggtgatggccattgtttagttcatgctgtgtccagggctttagtaggcagagaacttttt
tggcatgctttgcgtgaaaatctcaaacagcattttaaggtaaacctggatcgttacaaa
gcactatttcatgacttcattgatgcagcagaatgggaggatatcattaacgagtgtgat
cctttgtttgttcctcctgaaggagtacctttaggtctacgtaatattcacatatttggt
ttggccaatgtgttacatcgcccaatcattttgctggattccttgagtggaatgagaagt
tgtggtgattattcagctacttttctcccaggattagttcctgaagaaaaatgttggggt
aaggatggacagctgaataaacctatttgtattgcatggagcagttcaggacgtaaccat
tatatacctttggttggaataaaaaagggtcctttaccaaggcttcctttgaaactgttg
cccaaagcttggggtgtaccacaggagcttattagaaagtatataaagtttgaagatgac
aaatgtattttaggaggtgaccgaagtttgcaggacaagtacttgcagaggttagttgct
gcaatggaagaaattttcttgaagacacatgatattcacccttctctggtagcagatgtt
catcagtatatatacagaaggacaggggtgattggaatacagcctgaagatgttactgaa
gctgcaaagaaggccgtaattgaaaatcgtttgcagaaatgtttgatttgtggtgctctt
tccgaacttcatgtgcccactgagtggctagctccaggaggaaagctgtacaatttagct
acaagcacctatggccaactgaagccagacaaaaattacagctttcctgtcaaccatctg
gtctgctcatatgaccctaaagaagatgtactggtgccagattacaatttgagtcactta
acatcttgcaactggtgtcacggtacttccatgcgccatgtcagaggggatggttctgtt
gtgtacttagatggagatcgaactaatacccggtctgctggaggtaaatgtggctgcggc
tacaagcatttctgggaaggaaaggaatatgataacctgcctgaggcattcccaataact
ttggaatggaatgggaggatagttcgagaaactgtttattggtttcagtatgaaagtgac
gtggctctaaacagcaatgtttatgatgttgctatgaagcttgttactaagcattttcct
ggtgaatttgggagtgaaatcttgattcagaaggttgttaacaccatattacatcataca
gctaaaaaaaatcctgatgaatatactccagtcactgtcgaaggggcacatagtcgtaga
gttggtgacttgcaagatgagccagcatcagaaccacatttaccaaccaaaatcatttta
atgggtcagaaatcaaagactctgcataaagaagaactgaacatgagcaaaattgaacga
ggtattcagcagaacattactgaccatgcagctactgtgcaaaagaggaaaactgacaaa
ttacgccaagatctgaaggtaccaggccaaccaccttctcctggaattgttaaagatggg
tcatcatctgccccagccactcccatcaagtccccttattccacatcaccttccaaggtg
aaaaagattagagtaaccactagtgatggacgacaggcgacactgacccttcaagcttct
gtaacattttctgagtttcaagaaagcatagctaaagaatttagccttcccccacgtttg
caatgtatacggcatggctttcctctgaaggaactgcacccacctaaagtgggatgggag
aatgaggtattgcctctgcaacacggtgattgtgtttctgtggagattctgaaggacagc
aaggaatctgttcctgccgcttcaacatctgcagctcattcctggaaaactgaagaacct
gaagcatctggtagagcttctgttaaagagacgcaagagcatattgatcttgaaatgtct
tccctctgccttctagcaaccttaatgggagaagatgtttggtcttatgcaaagaagtta
ccacatttattcgaacaaggtggcgtattctataacacgatgaagaaagatgtaggttta
gcagatggcaaacacttcactcttccccatcttcctggtaagacatttgtgtataatgga
acaaacgataggctggagctgtgcattgatccagcagggcacattcccattggtcccaac
attgacagtctgatcaaagaggccttaagtcaattacggtctgagggagggtcaagaagt
agggaaggaagtccttcctcgcatggagggatgaaacttggcagtggaggagtggtgcga
aaaaaatctgaacaaatgccaaatgtcacggctttccaaggaaaaggccattcccttgga
actgcttcaagtagcccacagctggaacagaggcatagcagggaaatccaggtgcctagg
aaacaaagcactggtagttcttcaggaaccgatcttagttatggtattggccagtctagt
cccaaacatggggcttctccacccaaatcaagcagtgggaacagtcaaccagtacgaatg
gcacctggttttgtaacgatgagagacggtaggcaacttgatgccaatttaattgaagca
caacgtaaaaagttgcaggagatggtatcctccattcaagcttccatggataaacatatg
aaggatcaaaatgtggaacaattgataaatagtgatgccccagattcaaaactacactct
accacttcctcagctcagttaataatgagaactgaaagccttcaaactgatgcactggag
acaccatcaattacttcccaagaaggtgacaatgagaatttgagcatggaaacaacagct
gttggtgtggaactatcatcccatccatctgtaccatccagcaaggcacagaatggaaat
cttttaaatgaagaccttgaggaaatggatagtcaggaaatagaggggacaattgaacca
atggatcactcttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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