KEGG   Rhincodon typus (whale shark): 109934425
Entry
109934425         CDS       T06055                                 
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1
Organism
rtp  Rhincodon typus (whale shark)
SSDB
Motif
Pfam: XRN_M XRN_N XRN1_D1 XRN1_D2_D3
Other DBs
NCBI-GeneID: 109934425
NCBI-ProteinID: XP_048460442
Position
13:5006585..5060736
AA seq 967 aa
MNGIIHQCSHPNDEDVHFRISEEKIIADIFHYVEVLFRIIKPKKVFFMAVDGVAPRAKMN
QQRGRRFRSAKEAEEKIKKALEKGEILPTEARFDSNCITPGTAFMARLHEQLKYFINSKI
STDKSWEGVAVYLSGHETPGEGEHKIMEFIRAETRKPDHDPNTRHCLYGLDADLIMLGLT
SHEPNFSLLREEVRFGGRKSQKRITAVEETTFHLLHLSLMREYINYEFSSVRDKICFEYD
LERIIDDWILMGFLVGNDFIPHLPHLHINHDALPLLYKTYAEVLPSLGGYINEGGTLNLE
HFEKYLVKLSEFDREHFSDVFVDLKWFESKVGKKYLNEAAGIAAEEAKRRKKKNKVRDDM
CLAVLDDSGNETAASSNCRTEFNHEELLDDSKDEDNEDENDLFETEFRQYKRVYYMTKMG
VEVVSDEFLAQQAECYVQAIQWILHYYYHGVQSWSWYYPFHYAPYLSDIRYISKLKIKFD
IGKPFKPFEQLLAVLPAASKDLLPKCYQFLMTDEASPIIEYYPPDFKTDLNGKQQEWEAV
VLIPFIDEKRLLAAMEPCNSDLSEEEVQRNRHSNCVKFWWDKEIAFKYPSPWPEKFPDVE
QCHARHEEIPMDAWKVDLRYAKRHVTEKGSLYFRGFPTLRHIKHKFYLAKSGVQIFQQPS
RGENMLLELLPKEEENVDDVANQELGRSVYLNWPYLEEARVVAVSDQEMKYYLEEPAGVQ
KVYTEKTPPPTKVVYFGDTEQNMWHKEVHNITEFYHKRKGILINETSVLVYAQLLTGRRY
VFGHNGDVTLEKEWSKQVLPFAHQTIVRNLKSFDSSFSHFSSLDELFPPRIKVFMMGTPY
YGCMGEVQDSSDVVKDGRIRVVFTVPLEPQLDGIIQNQHKYSTKYNPGYVLASRLGVTGY
LVSRLTGSLFIGRGSKQNPLGEQKINVGLNLKFNKKNEEVPGYTKKVGNEWLYSSAVEEI
LNEYLER
NT seq 2904 nt   +upstreamnt  +downstreamnt
atgaatggaattattcatcaatgttctcacccaaatgatgaagatgtgcactttcgaatc
tctgaagaaaaaattatcgctgatattttccactatgtggaagtattatttcgcatcatc
aaaccaaagaaggtcttcttcatggcagttgatggtgtggctccaagagcaaaaatgaat
caacaacgtggcagacgttttagatcagcaaaagaagcagaagagaaaattaaaaaagca
ttagagaaaggagaaatccttccaacggaagccagatttgactccaactgtatcacccca
ggtactgcttttatggccaggttacatgagcagctaaaatattttataaactcgaagatt
tcaacagataaatcctgggaaggtgtggctgtgtacctgtcgggtcacgagaccccaggc
gagggagaacacaaaatcatggaatttattagagctgaaacaagaaaacctgatcatgat
cccaatacgagacactgtctgtatggactggatgctgatttaattatgcttggattaaca
agccatgaaccaaatttttcccttttgagggaagaagttcgatttggtggcaggaaatca
cagaaaaggattactgctgttgaagaaactacgtttcacttattgcacctgtccctaatg
agagagtatattaactatgagttttcatctgtacgggacaagatttgttttgaatatgac
cttgaacgaataattgatgactggatattgatggggtttcttgttggtaatgattttatt
cctcatctacctcatttacacatcaatcatgatgcactgcctttgctatacaagacgtac
gctgaggtcctaccaagccttggagggtatattaatgaaggcggaacattaaatttggaa
cactttgagaagtatcttgtaaaactgtctgagtttgatcgtgagcattttagtgacgtt
tttgtggacctaaagtggtttgaaagtaaagtgggtaaaaagtacctaaatgaggcagca
ggtattgcagcagaggaagcaaaacgacgtaaaaagaaaaacaaggttcgtgatgatatg
tgtttagctgtattggatgatagtggaaatgagacagcagccagttcaaactgcaggact
gaattcaatcacgaagaactattggatgacagcaaggatgaagacaacgaggatgagaat
gatttgtttgaaaccgaattcaggcaatacaagagagtttattacatgacgaagatgggt
gtagaagttgtttctgatgaatttctcgctcagcaagcagaatgttatgttcaagcaata
caatggattttgcactattattaccatggtgtgcagtcctggagctggtactatcctttt
cattatgcaccttacctatctgacatccgttatatcagcaagttgaagataaagtttgat
atagggaaaccattcaagccatttgagcagcttctagctgttctgccagcagccagcaaa
gatcttctacctaaatgctaccagtttttaatgactgatgaagcttcaccaatcatcgag
tactatcctccagatttcaaaacggaccttaatggcaagcaacaggagtgggaagctgtt
gttctgattccatttattgatgagaaacgattactggcagcgatggaaccatgtaatagt
gatctttcagaggaggaagtacagcgcaatagacacagtaattgtgtcaagttttggtgg
gacaaagaaattgccttcaaatatccatcaccatggccagaaaaatttccagatgtggag
caatgtcatgcaagacatgaagagattcccatggatgcatggaaagtagatctcaggtac
gctaaaaggcatgtcactgagaaggggtctttgtacttccgtgggtttccaactctgaga
catattaagcacaagttctacttagcgaagagtggagttcaaatctttcaacaaccaagc
cgtggagaaaatatgcttttggagttattgcccaaggaagaggaaaatgtggatgatgtt
gctaatcaggagcttggaaggtctgtttatttgaattggccttatcttgaggaagctcga
gttgttgctgtgtcggatcaagaaatgaaatattatttagaagaacctgcaggtgttcag
aaagtatacactgagaaaactccgccacctactaaagtagtttactttggagacactgaa
caaaacatgtggcacaaagaagtacataacataactgagttttaccataaaaggaaagga
atcctcatcaatgaaacgtcggtgcttgtgtatgcacagcttctcactgggcgtcgatac
gtatttggccataatggtgacgttaccttagagaaggaatggtcaaagcaagtactacca
tttgctcaccagaccattgtgaggaaccttaaatcatttgattccagtttctctcacttc
agttcattggatgaattgtttccacccagaattaaggtcttcatgatgggaacaccctac
tatggctgcatgggcgaggttcaagactcttctgatgttgtgaaagatggccgaatccgt
gtggttttcactgttcctttggagccacagctagatggtatcatacaaaaccagcacaaa
tattccacaaaatataaccctggttatgttttggccagtcgacttggagttactgggtat
cttgtgtcaaggttaacaggaagtttgtttattgggagaggatcaaagcaaaatcctctt
ggagaacagaaaataaatgtgggcctgaatctgaagttcaataagaagaatgaagaagta
cctggttacacaaagaaagttgggaatgaatggctatattcttctgcagttgaagagatt
ctgaatgaatatctagaaaggtaa

  All links  
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (7)   

Download RDF
DBGET integrated database retrieval system