KEGG   Rhincodon typus (whale shark): 109937407
Entry
109937407         CDS       T06055                                 
Symbol
tbpl1
Name
(RefSeq) TATA box-binding protein-like 1
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    109937407 (tbpl1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:rtp03000]
    109937407 (tbpl1)
   03021 Transcription machinery [BR:rtp03021]
    109937407 (tbpl1)
Transcription factors [BR:rtp03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    109937407 (tbpl1)
Transcription machinery [BR:rtp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     109937407 (tbpl1)
  RNA polymerase III system
    TFIIIB
     109937407 (tbpl1)
  RNA polymerase I system
    SL1/TIF-1B
     109937407 (tbpl1)
SSDB
Motif
Pfam: TBP
Other DBs
NCBI-GeneID: 109937407
NCBI-ProteinID: XP_020391576
Position
5:37140462..37189196
AA seq 186 aa
MEPDNDIALDILITNVVCVFKTRCHLNLRKIALEGTNVIYKRDVGKVLMKLRKPRITATI
WSSGKIICTGATSEEDAKTGARRLARLLQKLGFQVKFAGYKVVNVLAVCTMPFEIRLPEF
TKRNRPIASYEPELHPAASFRVKALKATLQIFSTGSITITAPSIQCVATAVEQTYPLIFE
SRKMIK
NT seq 561 nt   +upstreamnt  +downstreamnt
atggaacccgacaatgatattgcactggatattttgataacaaacgtagtctgtgtcttt
aaaacaagatgccatttaaatctccggaagattgcactggaaggaacgaatgtgatctac
aaaagagatgttggaaaggtattaatgaaactgaggaaacctaggataacagccacaatc
tggtcctcagggaaaattatatgcactggagctacgagtgaagaagatgcaaaaactggt
gctcgaagattagcccgccttctgcagaaactgggttttcaggtaaaatttgctggctat
aaagttgtcaatgtcctggctgtatgcacgatgccatttgaaataaggctaccagaattc
acaaaaagaaatcggccaattgcaagctacgagccagaactgcatcctgcagcatctttt
agagttaaagcgttaaaagccacacttcaaattttttccaccggcagtataacaataaca
gcacccagtatacagtgtgttgcgactgcagtggagcaaacctatcctttaatctttgaa
tcccgaaagatgatcaaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (7)   
   RefSeq(pep) (7)   
DNA sequence (7)   
   RefSeq(nuc) (7)   
Protein domain (1)   
   Pfam (1)   
All databases (23)   

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