KEGG   Rhincodon typus (whale shark): 109937606
Entry
109937606         CDS       T06055                                 
Name
(RefSeq) interferon beta-like
  KO
K05414  interferon alpha
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp04060  Cytokine-cytokine receptor interaction
rtp04217  Necroptosis
rtp04620  Toll-like receptor signaling pathway
rtp04621  NOD-like receptor signaling pathway
rtp04622  RIG-I-like receptor signaling pathway
rtp04623  Cytosolic DNA-sensing pathway
rtp05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04060 Cytokine-cytokine receptor interaction
    109937606
 09140 Cellular Processes
  09143 Cell growth and death
   04217 Necroptosis
    109937606
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    109937606
   04621 NOD-like receptor signaling pathway
    109937606
   04622 RIG-I-like receptor signaling pathway
    109937606
   04623 Cytosolic DNA-sensing pathway
    109937606
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    109937606
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04052 Cytokines and neuropeptides [BR:rtp04052]
    109937606
Cytokines and neuropeptides [BR:rtp04052]
 Cytokines
  Interferons
   109937606
SSDB
Motif
Pfam: Interferon RuBisCO_activase_AAA_helical
Other DBs
NCBI-GeneID: 109937606
NCBI-ProteinID: XP_020391693
Position
30:complement(9497100..9500902)
AA seq 179 aa
MALACTWQFVLPLFLLLGTLSQSYPIRLELHRRFTSEILEILDAMGGAFPVLCREQGMQI
KSLDLMEIAKNAKAEDKVMIFYQILRHTSKIYRTNVCSTMWDKNGLDEFAMLLFQQLKEL
RQDLGERQSGLKIFGRKRIRTYFRKLRTFLQNKGYNRCAWEMIRNESRKNLEEAISLLV
NT seq 540 nt   +upstreamnt  +downstreamnt
atggcgttggcttgtacttggcaatttgttcttccattgttcctgttgcttgggaccttg
agccagagctatccaataaggctggaactccaccgacgtttcaccagcgaaattttggaa
attctggatgcaatggggggcgcctttccagttctttgtcgagagcaggggatgcagatc
aaaagccttgatctgatggagattgcaaaaaatgcaaaggctgaggacaaagttatgatc
ttctatcaaatactgcgccataccagcaagatctacagaacaaatgtctgttccactatg
tgggacaagaatggattggatgaatttgcaatgcttttgtttcagcagctaaaggaactc
agacaggatttaggagaacgacagtcaggtttaaaaatttttgggagaaaaagaattcgt
acatatttccgaaaactgagaacatttctacaaaataaggggtacaatagatgtgcctgg
gaaatgatccgcaatgaaagcaggaaaaacttggaagaagccataagtctactggtgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (7)   
   KEGG PATHWAY (7)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system