KEGG   Salicibibacter kimchii: DT065_03105
Entry
DT065_03105       CDS       T05571                                 
Name
(GenBank) PolC-type DNA polymerase III
  KO
K03763  DNA polymerase III subunit alpha, Gram-positive type [EC:2.7.7.7]
Organism
rue  Salicibibacter kimchii
Pathway
rue03030  DNA replication
rue03430  Mismatch repair
rue03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rue00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    DT065_03105
   03430 Mismatch repair
    DT065_03105
   03440 Homologous recombination
    DT065_03105
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rue03032]
    DT065_03105
   03400 DNA repair and recombination proteins [BR:rue03400]
    DT065_03105
Enzymes [BR:rue01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     DT065_03105
DNA replication proteins [BR:rue03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     DT065_03105
DNA repair and recombination proteins [BR:rue03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     DT065_03105
SSDB
Motif
Pfam: DNA_pol3_alpha RNase_T PHP DNA_pol3_finger DNA_pol3_a_NII DNA_pol3_a_NI HHH_6 tRNA_anti-codon HHH_3 RNase_H_2 DEDDh_C DUF1409 CaMKII_AD
Other DBs
NCBI-ProteinID: AXF55104
UniProt: A0A345BVX3
Position
complement(584526..588824)
AA seq 1432 aa
MDDSAVRYERFQLLMEQIGIPEDVYQSELHSGRIEKLDVYREARKWHFTFRLDKPVNAFA
IQLLKEKLDAGFREMASIDFSIVYDEGSIPPEQVTPYWPAIIAKARDLPDHIALKLERSE
PAVNGRSLILTCHSEVEANSLSKQAGPVLEAAMESLGFEALTFSPKVEVATEEETRFLEQ
KKEEEQSKVIEAMMEQQKKEQQAEPKAKKSLQIGYPIKEEPLPLASIQDEERRVTIQGYV
FQAETRELRSGRMLLTFKLTDYTDSLLVKMFSRDKEDIPLFNEVKAGKWLKARGGIQDDT
FVRDLVMIANDVTEVQIARRMDEAPEDDKRIELHAHTTMSQMDGVATPSEIVEKAAEWGH
KAVAITDHGVVQAFPEAYAAAKKNDIKLLYGMEAYLVDDGVPIAYNESERDLAASTFVVF
DVETTGLSAVYDTIIELAAVKVANGEIVDRFESFAQPHVPLPAKITELTGITDEMLKDAP
EVSDVLQQFADFVGDAGLVAHNASFDIGFINAGYKKEGWPEVEQPVVDTLEFARFLFPNM
KNHRLNTLCKAFDIELVSHHRAIYDTEATAYLFMKMVRDAKEQGIDQHRQLNENIGQGDF
YKNRPSHCTILVQNQEGLKNLYQLVSLSHLSYFFRTPRIPRSKLVQYREGLLVGTGCEQG
EVFETMMQKSAEEAEKAARFYDFIEIQPPEIHGHLLEKDIIRSEAQLLDIMRKLYDVGER
LSIPVVATGNVHYLEPEDHIYRKILVSSQGGANPLNKQTMPKVHFRTTGEMLKAFAFLGE
EKARQAVVAYPKKIADEIEAIAPVPSGLYPPNIEGADEEMRTLTYGKAKRIYGENLPPIV
EDRLEKELESIIGHGYGVIYLISHKLVKRSLDDGYLVGSRGSVGSSFVATMSDITEVNPL
PPHYVCPGCCHSIFYDDGSVASGYDLPDQSCEQCGATYIREGHDIPFETFLGFKGDKVPD
IDLNFSGEYQPRAHAYTRELFGDDKVFRAGTIGTVADKTAYGFVRGYQNDHQINHIRGAE
IDRLVHGCTGAKRTTGQHPGGIIVVPGDKDIHDFCPVQYPADDKNASWKTTHFDFHSIDD
NLLKLDILGHDDPTVIRMLQDLSGIDPNDVPVDDPDVMRIFEGPEVLGVTPEQIMCKTGT
YGIPEFGTRFVRQMLEETKPKKFSELLQISGLSHGADVWLGNADELIRDGICELKDVIGL
RDDIMVNLIYKGLEPSLAFKITEFVRKGRGLEQEWIDEMKKHGVPDWYIQSCLKIKYMFP
KAHAAAYVLMAVRIAYFKVHHPILFYAAYFSVRASDFELDTMQKGSAAIRARIEDIQAKG
FDAAPKEKSLVTVLELALEMTERGFSFGAIDLYRSEASTFIVDGDTLIPPFGALEGVGAN
AAKNIVDARANGEFLSKEDLQQKSKATKNVIQILETSGCLEGLPDSNQLSLF
NT seq 4299 nt   +upstreamnt  +downstreamnt
atggatgacagcgctgttcggtatgaacggtttcaacttcttatggaacagattgggatc
cctgaagatgtttatcaatcagagctacactctgggcgcatcgaaaaattagatgtttat
cgggaagcacgcaaatggcattttacattcaggttggacaagccggtaaatgcgttcgcg
atccaactgttgaaggaaaagctggatgcaggattccgggaaatggcctcgatagatttt
tccatcgtttatgatgaaggcagcattccccccgaacaagtgacaccgtattggcccgcg
atcattgccaaagcccgagacctccccgatcatatcgccctgaagctggaacgatccgaa
ccggctgtaaacggacgttccttgattcttacgtgccacagtgaagtggaagccaattcc
ctttccaaacaggcaggacctgttttggaggccgcgatggaatcgttagggttcgaagcg
cttaccttttcccccaaagtcgaagtggctaccgaggaagaaacccgctttttagagcaa
aaaaaagaagaagaacaatccaaagtcattgaagcaatgatggaacaacaaaaaaaggaa
caacaagcggaaccgaaagcgaaaaaaagcctacaaatcggttacccgataaaagaggag
cccctcccgcttgcgtccatccaggatgaagaacggcgagtgacgattcagggatacgtg
tttcaggcagaaacgcgtgagctaagaagcggtcgaatgctattaacgtttaaactgacc
gattacacagactctttgcttgtgaaaatgttttccagagataaggaggacatcccgcta
tttaatgaagtgaaagcgggcaagtggttgaaagcaagggggggcattcaagatgatacg
tttgttcgtgacctcgttatgattgccaatgacgtcacggaagttcaaattgcgcggcgg
atggatgaagcccctgaagatgataaacgaattgaattgcacgcgcatacgacgatgagc
caaatggacggcgtggcaactccgagtgaaattgtggaaaaggcagcagagtgggggcat
aaagctgtcgcgattacggatcacggagtcgtgcaggccttccccgaagcttacgcggca
gctaaaaaaaatgatataaaactgctttacggaatggaagcttatctcgttgatgatggt
gtgccgatcgcgtacaacgagagcgaacgagatctagctgcatcaacgtttgtcgtcttt
gatgtggagacgaccgggctctcggctgtctatgatacgatcattgaattggctgccgta
aaagtggcgaacggtgagattgtcgatcgttttgaatcatttgcacagccgcatgtcccc
ttacccgcgaagatcactgaacttaccggtattaccgatgaaatgctgaaagatgccccc
gaggtcagcgatgtcttgcaacagtttgcggactttgtcggcgacgcgggccttgtcgca
cataacgcaagctttgatatcgggtttatcaacgccggttataaaaaagaaggctggcct
gaggtggaacaaccggtcgtcgacacgttggaatttgcccgatttttatttcccaatatg
aaaaatcatcggctgaacacgttatgcaaagcgtttgatattgaacttgtcagtcaccac
cgcgctatttatgatacggaagccacggcgtacctttttatgaaaatggtccgggacgcc
aaggaacagggcattgatcagcatcgtcaacttaatgaaaatattggtcaaggcgatttt
tataaaaacagaccttcccattgcacgattctcgttcaaaatcaagaaggcttgaaaaac
ttgtatcaactcgtgtccttgtcccatttatcgtattttttccgaacaccgcgaatcccg
cgttcaaagcttgtccagtatagagaagggttgctggtcggcacgggctgtgagcagggg
gaagtctttgaaacaatgatgcaaaaatctgccgaagaagcagagaaggcggcgcgtttc
tatgattttattgaaattcagccgccggagatccatggccatctattggaaaaagacatc
attagaagtgaagcgcaactcttggacattatgcgaaagttgtacgacgttggcgaacgt
ctgtcaataccggtcgtcgctaccggaaatgtccattatttagaaccggaagatcatatc
tatcgaaaaatcctcgtctcctctcaaggcggagcgaacccgttgaataaacaaacgatg
ccgaaggtgcactttcgcacgaccggggaaatgctgaaggcatttgctttcctaggggaa
gaaaaggcgcgtcaagccgtcgtcgcatatccaaaaaagatcgccgatgagatcgaagcg
atcgccccggttccaagcggtttgtacccgccaaacatcgagggcgctgacgaagaaatg
cggacactcacctatggaaaagcaaaaaggatatacggggagaacctccctcccattgtc
gaagatcgtctggaaaaggaattggaaagcatcatcggtcatgggtacggcgtaatctat
ttgatctcccataaactcgtcaaacgctccttggatgatgggtatctcgtcggctcccgc
ggttcagtcgggtcttccttcgtggcgacgatgtccgatatcacagaagtcaatccgttg
ccgccccattacgtttgtccgggctgttgccattccattttttatgacgatgggtcggta
gcgtcggggtatgacttgccggatcaatcctgtgagcaatgtggcgccacgtatatccga
gaaggccatgacattcccttcgaaacgtttctcggctttaaaggtgacaaagtccctgat
atcgatttaaatttttccggagaataccagccacgcgcgcatgcctatacccgtgaattg
ttcggggatgataaagtgtttcgagcgggaacgatcggcacggttgcggataaaacggct
tatgggttcgttcgcgggtaccaaaatgaccatcagattaaccatatccgcggcgctgaa
attgaccgcctcgtccatggttgcaccggagcgaaaagaaccaccggtcaacatccgggc
gggatcatcgtcgtccccggagataaagatatccacgatttttgtccggtccaatacccg
gcggatgacaaaaatgcgagttggaaaacaacgcattttgattttcactctatcgacgat
aacttattaaaactcgatattctcggccacgacgatccgacggtcatccggatgttgcag
gatttgagcggcatcgatccgaacgatgttcccgtggatgatcccgacgtcatgcgtata
tttgaagggccggaagtgctcggcgtcaccccggaacaaattatgtgcaaaactggcacc
tatggaattccggagttcggcacacgtttcgttcggcaaatgttggaagaaacgaagccg
aagaagttttccgagcttctgcaaatttccggtttgtcccacggggccgatgtttggctc
ggaaatgcggatgaattaatccgcgatgggatttgtgaactgaaagacgtgattggcctg
agagacgacattatggttaatctcatttataaagggttggaaccatcgcttgcttttaaa
attaccgaattcgtccgtaaaggaagagggttggaacaagaatggattgacgagatgaaa
aagcacggcgtccccgattggtacattcagtcctgtttgaaaatcaagtatatgttcccg
aaggcgcacgcggcggcttatgtactgatggcggtaagaatcgcttattttaaagtccac
catccgatactgttctacgctgcttattttagcgtacgagccagcgatttcgagcttgac
acgatgcaaaaaggaagcgcggcgatccgggcacgcatcgaagacatccaagccaaaggg
tttgatgcggcaccaaaagaaaaaagcttggtgacggtattagaactggcgttggaaatg
acggagcgcggtttttcgttcggagcgatcgatctttatcgatcagaggcaagcacgttc
atcgtggatggagacacattgatcccaccgtttggcgcgttggaaggggtaggcgccaat
gccgccaaaaacatcgtagacgcgcgagcgaatggagagtttttatccaaagaagacttg
cagcaaaaaagcaaagcgacgaaaaacgtcattcaaattttggagacgagcggctgcctg
gaaggtctgccggattcgaatcagctttcgttattctag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (26)   

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