KEGG   Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_I01376
Entry
RBI_I01376        CDS       T03158                                 
Name
(GenBank) probable deoxyribonuclease IV
  KO
K01151  deoxyribonuclease IV [EC:3.1.21.2]
Organism
rus  Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:rus00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    RBI_I01376
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:rus03400]
    RBI_I01376
Enzymes [BR:rus01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.21  Endodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.21.2  deoxyribonuclease IV
     RBI_I01376
DNA repair and recombination proteins [BR:rus03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     RBI_I01376
SSDB
Motif
Pfam: AP_endonuc_2 DUF4917
Other DBs
NCBI-ProteinID: CCO05088
UniProt: W0U4R4
Position
I:1536882..1537736
AA seq 284 aa
MSAKFGPAGNSEAFSIKYKTTLQAPGYLEVMGLDHYEYQCGRGVKVSDKIAFALKDKAKE
HNITLSLHAPYFISLSSLEAEKRDNSINYILQSCDAASRMGADRIVIHSGSCAKISREDA
LELAKDTLTRARKTAVEQGFEHIVFCPETMGKVNQLGNLTEVLELCKLDDTFLPTIDFGH
LNAREFGYIKGKAEYEKMLDEVENAIGHDRLKIFHSHFSKIMFTNPGGEKKHLTFDDNQG
FGPDYEPLMEIVAKKDLSPIFVCESAGTQDKDALTMKNYYLSVK
NT seq 855 nt   +upstreamnt  +downstreamnt
atgtcggcaaaattcggacctgcgggaaacagcgaggctttttccattaaatataaaaca
acacttcaagctccgggatatctcgaagtaatggggcttgaccactatgaatatcagtgt
ggaaggggagttaaggtctccgataaaatagcttttgccttgaaagataaggcaaaagag
cataatatcacgctttcgctccatgcgccgtattttatttcgctttcaagccttgaagct
gaaaagcgtgacaacagcataaattatattctgcaatcctgtgacgctgcaagcagaatg
ggtgctgatagaatagttatccattcaggaagttgtgcgaaaataagtagagaggacgct
ttggaacttgctaaagatactctcacaagggcaagaaaaacagctgttgagcagggcttt
gagcatatcgtcttttgccctgaaactatgggtaaggtaaatcagcttggtaacttaaca
gaagtgctggagctttgcaagcttgatgatacgttccttccgacaatagatttcggacat
ctcaacgcaagagagttcggctatataaaaggtaaggcagagtatgagaaaatgcttgat
gaagtggaaaatgctatcggtcacgacaggctgaaaatattccacagccatttttctaag
ataatgtttacaaatccaggcggcgagaaaaagcacctgacttttgacgataatcaaggc
tttggacctgactatgagccgcttatggagatagtcgcaaagaaagatctttcgcctata
ttcgtctgtgaaagtgcaggcactcaggacaaagacgcactgacaatgaagaattattat
ttgtcggtgaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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