KEGG   Candidatus Rickettsiella viridis: RVIR1_11150
Entry
RVIR1_11150       CDS       T05765                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
rvi  Candidatus Rickettsiella viridis
Pathway
rvi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rvi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    RVIR1_11150 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rvi03021]
    RVIR1_11150 (rpoB)
   03400 DNA repair and recombination proteins [BR:rvi03400]
    RVIR1_11150 (rpoB)
Enzymes [BR:rvi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     RVIR1_11150 (rpoB)
Transcription machinery [BR:rvi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     RVIR1_11150 (rpoB)
DNA repair and recombination proteins [BR:rvi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      RVIR1_11150 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_3 RNA_pol_Rpb2_1 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45
Other DBs
NCBI-ProteinID: BBB15583
UniProt: A0A2Z5UX37
Position
complement(1170942..1175072)
AA seq 1376 aa
MVIRISQATESAAKPYSFTEKKRIRKNFGKQATIMEAPYLLATQIESYHRFLQTDTPADA
LEEFGLNAAFKSVFPISSYSGGEATLEYISYRIGQPPFDVKECQARGLTYGAPLRVKMRL
IIFDEAAPGTNRIKNIKEQEVYMGELPLMTDTGSFVINGTDRVVVSQLHRSPGVFFEHDK
GKTHSSGKLLYAARIIPYRGSWLDFEFDPKDNLFVRIDRRRKLAATILLRALGFTTEEIL
ELFFANNTFHFKGESVVLDLVPERLRGEIATFDIKDAAGKVIIEQGRRIAARQIRQLEQA
KIKQLEFTAEYLLGKTLAKPVIDPETGEILFEANTELTADIIKKIAESGIKTIETLYTND
LDSGAYVSTTLRIDPSNSQQEALVEIYRMMRPGEPPTKEAAEALFKNLFFVPDRYDLSAV
GRMKFNRRLGREEILGSGTLAKEDIVDVLKALIDIRNGKGDVDDIDHLGNRRVRSVGEMA
ENQFRVGLVRVERAVRDRLSVAESENLMPQDLINAKPISAAIKEFFGSSQLSQFMDQVNP
LSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAVYAR
TNHYGFLETPYRKVENGKVTHEIQYLSAIEEGKYVIAQANTRLDSHGRLIDDLIPSRHRN
ESMLTTADKVDYMDISPSQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRTEKPLV
GTGMERKVAVDSGVVVVAKRSGFIDSVDAGRIVVRVDDEEAVAGTAGVDIYNLTKYTRSN
QNTCINQRPLVNKGDKIKKGDVLADGPSTDLGELALGRNLLVAFMPWNGYNFEDSILISE
RVVSEDRFTTIHIEELTCIGRDTKLGSEEITSDIPNVGESALSKLDESGIVHLGAWVEGG
DILVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDSSLRVPSGMRGTVIDVQVFTRDGLE
KDQRALSIEAAALEKIKKDLYDEFRILENDSYQRLETLLVGAVASSGPNKLKSGSKVTLE
YLNTLSKDQWFSVSLRDEAANQQLEAVAKQLEAARLALDEKFESKRKKLTQGDDLAPGIL
KIVKVYLAIKRCIQPGDKMAGRHGNKGVISTIIPVEDMPYMEDGTPVDIVLNPLGVPSRM
NVGQVLETHLGWAAKGLGLKIGGMLDNKKNMKEIKTFLGSIYNDNKQTAQKVDLDALSNE
ETLELAQNLRKGVTMATPVFDGVTETEIKRMLRLADLPESGQTTLYDGRTGQRFERPVTV
GYMYMLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTL
QEMLTVKSDDVAGRTKMYKNIVDGDHHMEAGMPESFNVLVKEIRSLAINAELETKD
NT seq 4131 nt   +upstreamnt  +downstreamnt
atggtaattcggatatcccaagcaactgagtcagcggctaagccttattcattcacagaa
aaaaaacgtattcggaaaaattttggtaaacaagccacgattatggaggcgccttatctt
ttagcgacccagatcgagtcttaccatcgttttttgcaaacagataccccagcagacgct
ttagaagagtttgggttgaatgcggcttttaaatcagtgtttcctatttcttcttattct
ggtggtgaagcgaccttagaatatatcagctaccgaatagggcaaccgccttttgatgtc
aaagaatgtcaagcacgcggtctaacctacggtgcgcctttacgtgtcaagatgcgtttg
attatttttgatgaagcagcgccgggcactaaccgaattaaaaatattaaagaacaagaa
gtctacatgggtgaattgcccttgatgacggatacaggtagttttgttattaatggaact
gaccgtgtggttgtttcgcaactacatcgttcgccgggtgtatttttcgagcatgataag
ggtaaaacacactcatccggtaaattactttatgcagcacgcattattccttaccgtggt
tcatggctagattttgaatttgatcccaaagataacctctttgttcgtatcgacagacgc
cgtaaattagcggcaacgatcctattacgtgccttaggatttaccactgaagaaatactc
gaattatttttcgcgaataataccttccatttcaaaggtgagtcagttgttttagattta
gtacctgagcgcctacgcggtgaaatcgccacatttgatattaaggatgcagcaggtaaa
gttattatagaacaaggtcgccgtattgctgcgcgacaaattcgacagttagaacaagca
aaaataaaacaattagagtttacagctgaatatttgctgggtaaaaccttagcaaaacca
gtcattgacccagaaacaggtgagattttatttgaagcgaataccgaattaaccgctgat
atcattaaaaaaatagctgagtccggtataaaaaccattgaaacattgtataccaatgat
ttagattcaggcgcttatgtttccacgaccctgcgtattgatcctagcaatagccagcaa
gaagcattggtagaaatctaccgtatgatgcgtccgggtgagccgccaaccaaagaagca
gcagaagctttatttaaaaatctgttttttgttcctgatcgttatgatttatccgctgta
ggccgaatgaagtttaatcggcgtttagggcgtgaagaaattttaggatctggcacttta
gctaaagaagatattgttgatgttttaaaagccttgattgatattcgtaatggtaaaggc
gatgtcgatgatattgaccatttaggcaatcgacgtgtgcgtagtgtgggtgagatggct
gaaaaccagttccgtgttggcttagtgcgtgtggaacgagcagttagagatcgtctcagt
gtggcagagtctgaaaatttaatgccgcaagatttaattaacgctaaacctatttctgcg
gcgataaaagaattttttggttccagtcaattatctcagttcatggaccaagtaaatcca
ctttcagaaattacgcataaacgacgtgtttcagcgcttggaccgggtggtttaacccgt
gaacgtgcgggctttgaagttcgggacgtgcatccaacccattatggtcgtgtttgtccg
attgaaacaccggaaggacctaatattggcttgattaattctctggctgtttacgcacgc
acaaaccattatggattccttgaaaccccttatcgaaaagttgaaaacggtaaagtaacg
catgaaatccaatatttatcagctattgaagaaggtaaatatgttattgcgcaggctaat
acacgtttggatagccatggccgactcatcgatgatttgattccttcacgccatcgtaat
gaatccatgctgacaacagcagataaagtcgattatatggatatttcgccgtcgcaggtt
gtttccgtagcggcttctttaattccgttcttagaacacgacgatgcaaaccgtgcattg
atgggttctaatatgcaacgtcaggcggttcctaccttacgtactgaaaaacccttagtg
ggaacagggatggaacgtaaagtggcggtagactcgggtgttgttgttgtcgcaaaacgt
agtggttttattgattccgttgatgcaggtcgaattgttgtgcgtgtagacgacgaggaa
gcggtagcaggtaccgccggggttgatatctataacctgacaaaatatacacgttctaat
caaaatacctgtattaaccaacgacctttagtcaataaaggcgacaagattaagaaaggg
gatgtattagcggatggtccttctacggatctcggtgaattagcattagggcgcaattta
ttagtcgcatttatgccttggaatggatataacttcgaagattctattttaatttcagag
cgcgttgtttctgaagatcgttttaccacgattcacattgaagaactgacctgtattggt
cgtgataccaaattaggttctgaagaaattacgtctgatattcctaatgtcggtgaaagt
gcgctttctaaattagatgaatctgggattgtacacttaggggcttgggttgaaggtggt
gatattctggttggaaaagtgacaccaaaaggtgaaacacaattaacgccagaagaaaaa
ttattacgcgctatttttggtgaaaaggcctccgatgtaaaagatagttcattacgtgtg
ccttccggcatgcgaggaacagttatcgacgtgcaagtctttacacgtgatggtctggaa
aaagatcaacgtgctttaagtatcgaagctgcggctttagaaaaaattaagaaagattta
tacgacgaatttagaattttagaaaatgatagttaccaacgtttagaaacattattggtg
ggtgctgttgcgagcagtggtcctaataagctcaaatcaggtagcaaggtaacgctggaa
tacttgaatacgctgtctaaagatcagtggttttcggtcagcttgcgtgatgaagccgcc
aatcaacagttagaagctgttgctaagcaacttgaagcagctcgtttagctttagatgaa
aagtttgaaagtaaacgtaaaaaattaacccaaggcgatgatttagcaccagggatactc
aaaatcgttaaggtgtatttggctattaagcgttgtattcagccaggggataaaatggcg
ggtcgacatggtaacaaaggggttatttcaaccattatccccgtcgaagatatgccttat
atggaagatggtacgcccgtggatatcgtattgaatccattaggggttccatcgcgtatg
aacgtggggcaagtattagaaacccatttaggttgggcagccaagggcttaggtttaaag
ataggcggcatgttagataacaagaaaaacatgaaagaaatcaaaacctttttaggctcc
atctataacgataataagcaaaccgcgcaaaaggttgatctcgatgcgttatcgaatgaa
gaaacgctcgagttagcgcagaatttgcgtaaaggtgtgactatggcgacccctgttttt
gatggtgtgactgaaacggaaatcaagcgcatgttacgtttagcggatctacctgaatca
ggccaaacaacgctttatgatggtagaacgggtcagcgttttgaacgccctgttacagtt
ggttatatgtatatgctcaaactaaatcacttagttgacgataaaatgcatgcccgatca
acgggttcttatagtttagtcactcaacagccgttgggtggtaaagcacagtttggtgga
cagcgatttggtgaaatggaagtatgggctttagaggcctacggtgcagcttacacctta
caagaaatgttaacggtgaaatcagatgatgtcgctggtcgaacgaagatgtataaaaat
attgttgatggtgaccatcatatggaagcgggtatgccagaatcgtttaacgtattagtc
aaggaaatacgctccttggcaattaatgcagaattagaaaccaaagattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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