KEGG   Stenotrophomonas acidaminiphila: AOT14_22030
Entry
AOT14_22030       CDS       T04107                                 
Name
(GenBank) ribonuclease E
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
sacz  Stenotrophomonas acidaminiphila
Pathway
sacz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sacz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    AOT14_22030
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sacz03019]
    AOT14_22030
   03009 Ribosome biogenesis [BR:sacz03009]
    AOT14_22030
Enzymes [BR:sacz01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     AOT14_22030
Messenger RNA biogenesis [BR:sacz03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     AOT14_22030
Ribosome biogenesis [BR:sacz03009]
 Prokaryotic type
  rRNA processing factors
   AOT14_22030
SSDB
Motif
Pfam: RNase_E_G RNase_E_G_Thio S1 DUF4901
Other DBs
NCBI-ProteinID: ALJ28577
UniProt: A0A0S1B0J7
Position
2424543..2427737
AA seq 1064 aa
MAFRAVAAREERTMKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRIT
RLEPSLEAAFVEYGGDKHGFLPLKEISRDYFQAGVDHNKAGIRELLREGQEVVVQVDKEE
RGNKGAALTTFISLAGRYMVLMPNSPSAGGVSRRIEGEDRAALKDALDKLNIPDDMGVII
RTAGVGRDAEELQWDLDYLLQVWRSIAEAALAKPAPFLIYQESRLIVRALRDYLRADIGE
ILVDTEELYETAREFMQQVMPQTLRKLKHYKDDIPLFNRFQIESQIEAIYERNVRLPSGG
SIVVDQTEALTAIDVNSARATKGSDIEDTAFQTNLEAAEEVARQLRLRDLGGLVVIDFID
MSSNKHQREVENRLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDG
QGRMRSVESLSLSIIRVAEEHAMKENTGQVLVQAPVEIANFLLNEKRSALREIERRHDAP
IIIVADEQLHTPHYEVTRLRENELGEESGRPSYQRGTPRKLPVHALTKAQLNIPPAPAVT
HVKHSQPAPVREIPEPAQTPVPAPVAAPAPAVPASGGVMRWLKRIFGGETAPAAPAQPQP
RQDSGRGNRNERNNPRRDGRNGNNGANGQPARNGGNGNGNRRDEQRRDERRDERRQGGGG
NPQQQNAGQQQPKQRGEQQAPQGKQQRNNEQQQPKPQKQPKQPKPQQEADKAVQPASEKP
ARQPQAEAPRPVVAAAPAMAAATVVATVDTDATEAPAKVQLPVVEDAAAVTTTAEQAIVA
TDETTAPATDDGTGDGASRRRRGRRGGRRRRRGNAEGTGNADTDVLGNDDDIADEGEDAG
NEATGTDAVAAAAQPEFDFDDEPAIAYAPARAPRPARAEAPVAPQAEPAATPAAAIAAVG
IAAEPETTAIAQPEPVLETVVATAEATPVVVPAAEAAPVVAPVAEAVQPAAAAVHQEAPE
PAVVAEPAAPVEAVVVAAEPVAVAAEPIPVPAATPEPALPENGQLFAEAPVTAPATGEQH
ASGDQAPLATSVESEAAAIATAEVEAAAEAEASAPNPDEPHRNA
NT seq 3195 nt   +upstreamnt  +downstreamnt
atggcgttccgcgcggtagcagcgcgcgaggaacgcacaatgaagcgaatgctgatcaat
gccacgcaggccgaagagctgcgcgtggccatcgtggacggccagactctgtacgacatc
gacatcgaacagccgtccaaggaacagaagaagtccaacatctacaagggccgcatcacc
cggctcgaaccctccctcgaagcggctttcgtcgaatacggcggtgacaagcatggcttc
ctgccgctgaaggagatctcccgcgattacttccaggccggtgtcgaccacaacaaggcc
ggcatccgcgagctgctgcgcgagggccaggaagtcgtggtccaggtcgacaaggaggag
cgcggcaacaagggcgccgccctgaccacgttcatctccctggccggccgctacatggtg
ctgatgccgaactcgccgtcggccggcggcgtctcgcgccgcatcgagggcgaggatcgc
gccgcgctcaaggacgcgctggacaagctgaacatccccgacgacatgggcgtgatcatc
cgcaccgccggcgtcggccgcgatgccgaggaactgcagtgggacctggactacctgctg
caggtctggcgctccatcgccgaggccgcgctggccaagcccgcgccgttcctgatctac
caggagtcgcgcctgatcgtacgcgccctgcgcgactacctgcgcgccgacatcggcgag
atcctggtggacaccgaggagctgtacgagaccgcgcgcgagttcatgcagcaggtgatg
ccgcagaccctgcgcaagctcaagcactacaaggacgacatcccgctgttcaaccgcttc
cagatcgaatcgcagatcgaggcgatctacgagcgcaacgtgcgcctgccgtccggcggc
tcgatcgtggtcgaccagaccgaagcgctgaccgccatcgacgtgaactcggcccgcgcc
accaagggcagcgacatcgaggacaccgcgttccagaccaacctggaagccgccgaggaa
gtggcccgccagctgcgcctgcgcgacctgggcggcctggtggtgatcgacttcatcgac
atgtcctcgaacaagcaccagcgcgaagtcgagaaccgcctgcagaacgcgctgaagtac
gaccgcgcgcgcgtgcagctgggccgcatctcgcgcttcgggctgatggaaatgagccgc
cagcggctgcgcccgagcctgggcgagtccagccagatcgtgtgcccgcgctgcgacggc
cagggccgcatgcgtagcgtcgagtcgctgtcgctgtcgatcatccgcgtcgccgaagag
cacgcgatgaaggaaaacaccggtcaggtactggtccaggccccggtcgagatcgccaac
ttcctgctcaacgagaagcgcagcgcgctgcgcgagatcgagcgccgccacgacgcgccg
atcatcatcgtcgccgacgagcagctgcacaccccgcattacgaagtcacccgcctgcgc
gagaacgagctgggcgaggagtcgggcaggccgagctaccagcgcggcaccccgcgcaag
ctgccggtgcacgccctgaccaaggcgcagctgaacatcccgccggcaccggcggtgacc
cacgtcaagcacagccagccggccccggtgcgcgagatcccggaaccggcacagacgccg
gtcccggctccggtcgccgcaccggcgcctgccgtgccggcaagcggcggcgtgatgagg
tggctcaagcgcatcttcggtggcgaaaccgcaccggcggcaccggcccagccgcagccg
cgccaggacagcggccgcggcaaccgcaacgagcgcaacaacccgcgccgcgacggccgc
aatggcaacaacggcgccaacggccagccggcacgcaacggcggcaatggcaacggcaac
cgtcgcgacgaacagcgccgcgacgagcgtcgtgatgagcgtcgccagggcggcggcggc
aacccgcagcagcagaacgccggccagcagcagcccaagcagcgtggcgaacagcaggcc
ccgcagggcaagcagcagcgcaacaacgaacagcagcagcccaagccgcagaagcagccc
aagcagcccaagccgcagcaggaagcggacaaggccgtgcagccggccagcgaaaagccg
gcacggcagccgcaggccgaggccccgcgcccggtcgtggcagccgccccggccatggct
gcggcaaccgtggtcgccaccgtggatacggacgccaccgaggcaccggccaaggtgcag
ctgccggtcgtggaggacgccgcagcggtgaccaccaccgccgagcaggccattgttgcg
accgatgagaccaccgccccggccaccgacgatggcactggcgacggcgccagccgccgc
cgccgtggtcgccgtggcggccgccgccgtcgccgcggcaatgccgaaggcaccggcaac
gccgataccgacgtgctgggcaacgatgacgacatcgccgacgagggcgaggacgccggc
aacgaggccaccggaacggacgccgtagcggccgcggcccagccggagttcgatttcgac
gacgagccggcgattgcctatgcgcccgcacgtgcaccgcgccctgcgcgcgccgaagcg
cctgtcgcgccgcaggccgagcccgctgcaacgcctgccgccgcgatcgcggcggtgggc
atcgccgccgaaccggaaaccacggccatcgcgcaaccggaacccgtgctggaaaccgtg
gtggcgacggcggaagccacgcccgtcgtcgtaccggcagcggaagccgcaccggtcgtc
gccccggtggcggaagccgtgcagccggcagctgcagccgtgcatcaggaagccccggag
ccggcggtcgtcgccgagcctgcggcgccggtcgaggcagtggtggtggccgccgaaccg
gttgcggttgcggcagagccgattccggtcccggctgccacgccggaaccggccctgccg
gagaacggacagctgttcgccgaggcaccggtgacggcgccggcaaccggcgagcagcac
gcgtccggcgaccaggcgccgctggccacgagcgttgaatccgaagccgctgcgatcgcc
accgccgaagtcgaggctgcggccgaggccgaggccagcgcgccgaacccggacgagccg
caccgcaacgcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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