KEGG   Simiduia agarivorans: M5M_17800Help
Entry
M5M_17800         CDS       T02281                                 

Gene name
murD
Definition
(GenBank) UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
  KO
K01925  UDP-N-acetylmuramoylalanine--D-glutamate ligase [EC:6.3.2.9]
Organism
saga  Simiduia agarivorans
Pathway
saga00471  D-Glutamine and D-glutamate metabolism
saga00550  Peptidoglycan biosynthesis
saga01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:saga00001]
 09100 Metabolism
  09106 Metabolism of other amino acids
   00471 D-Glutamine and D-glutamate metabolism
    M5M_17800 (murD)
  09107 Glycan biosynthesis and metabolism
   00550 Peptidoglycan biosynthesis
    M5M_17800 (murD)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01011 Peptidoglycan biosynthesis and degradation proteins [BR:saga01011]
    M5M_17800 (murD)
Enzymes [BR:saga01000]
 6. Ligases
  6.3  Forming carbon-nitrogen bonds
   6.3.2  Acid-D-amino-acid ligases (peptide synthases)
    6.3.2.9  UDP-N-acetylmuramoyl-L-alanine---D-glutamate ligase
     M5M_17800 (murD)
Peptidoglycan biosynthesis and degradation proteins [BR:saga01011]
 Precursor biosynthesis
  Amino acid ligase
   M5M_17800 (murD)
BRITE hierarchy
SSDB OrthologParalogGene clusterGFIT
Motif
Pfam: Mur_ligase_M Mur_ligase_C DAO
Motif
Other DBs
NCBI-ProteinID: AFV00689
UniProt: K4KRD6
Position
3921543..3922892
Genome map
AA seq 449 aa AA seqDB search
MDNLIAKSKQLAVVGLGVTGLSVARYCTRKQLPFALFDSRLAPAQLDTFKREFPNVEVHL
GPLDVDKLVGFDEIILSPGLSLKEAAIAECVTRGLPVVGDIELFVREATAPIVAITGSNA
KSTVTTLVGDMAKDAGLKVGVGGNLGTAALDLLADDAELYVLELSSFQLETTQRVGARVA
SVLNLSDDHQDRYDSFAAYHAAKMRIYFGAEHIVINRDDVLTRPPLGNHVTVSSFGLGKP
DFKEFGVMMVKGEAHLAYQFEPLLPVSELKIRGKHNVANALAALAIGTAAGLPLAGMLKT
LKQFKGLPHRCEWVASVRGVEYINDSKGTNVGATLAAIEGFASDQHKLVLIAGGDGKGAD
FAPLKQAIDQHVRGLVVIGKDAKAIAALAGPQVQVGFASDMGDAVVQAQAIAHAGDKVLL
SPACASLDMFRNYADRGEQFVASVRGLLG
NT seq 1350 nt NT seq  +upstreamnt  +downstreamnt
gtggataatctgatcgcaaaaagtaagcaacttgccgtggtgggtctgggcgtcaccggg
ctgtcggttgcgcgttattgtacgcgcaagcagttgccttttgcgttgtttgactcccgc
ttagcgccggcccagttggatacgttcaagcgcgaatttcccaacgtcgaagtccacctg
ggtcctttggatgtggacaagttggtcggctttgatgagatcatcctgagcccgggtttg
agtctgaaagaagcggcgattgcagagtgtgtgactcgcggcctcccggtcgtgggtgac
attgagttatttgtgcgtgaggcaacagcgcccatcgttgcgattaccggctctaacgcc
aagagcactgtcaccacgctggtgggtgacatggcaaaggacgcagggctcaaggttggc
gtaggaggcaatctcggtaccgctgcattggacctgcttgctgacgacgccgagttgtac
gtgctggaattgtccagctttcagctggaaaccacgcagcgggttggtgcccgtgtcgcc
agtgtgctgaatcttagcgatgatcaccaggatcgttacgatagttttgccgcctaccac
gcagcgaaaatgcggatttatttcggcgccgaacacatcgtgattaatcgtgatgatgtg
ctgacccgcccgccattgggtaaccatgttacggtcagcagtttcggcttgggtaagccg
gatttcaaagagttcggtgtgatgatggtgaaaggtgaggcacaccttgcgtaccagttt
gagccgttgttgccggtcagcgaactgaaaatccgtggcaagcacaatgtggcaaatgct
ttggccgcgctggccatcggtactgccgcaggcttacctttggcgggcatgttgaaaacg
ctcaaacaattcaaaggattaccgcaccggtgtgaatgggtagcgtcagttcgtggcgtt
gaatacatcaatgattccaaaggcaccaatgtgggtgccacgctggctgccatagaaggg
tttgccagtgatcagcacaagctggtgctcattgccggcggtgatggtaaaggcgccgat
ttcgcaccgctaaaacaggcaattgatcagcatgtgcgcggtctggttgtgatcggtaaa
gatgcaaaggcgattgcagcactcgcaggtcctcaggttcaggtaggttttgcctctgat
atgggcgatgcggttgtgcaggcgcaggccattgcgcacgcaggtgataaggtgttgttg
tcacccgcgtgtgcatcgctggacatgttccgcaattacgcggaccgcggtgagcaattc
gtcgcatcggtcagggggttgctgggatga

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