KEGG   Shewanella algae: BS332_13065
Entry
BS332_13065       CDS       T05622                                 
Name
(GenBank) polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
salg  Shewanella algae
Pathway
salg03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:salg00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BS332_13065
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:salg03019]
    BS332_13065
   03016 Transfer RNA biogenesis [BR:salg03016]
    BS332_13065
Enzymes [BR:salg01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     BS332_13065
Messenger RNA biogenesis [BR:salg03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BS332_13065
Transfer RNA biogenesis [BR:salg03016]
 Prokaryotic type
  tRNA degradation factors
   BS332_13065
SSDB
Motif
Pfam: RNase_PH PNPase S1 RNase_PH_C KH_1 KH_2 S1_2 KhpA-B_KH
Other DBs
NCBI-ProteinID: AXQ15083
Position
2870274..2872376
AA seq 700 aa
MNPIVKSFEYGQHTVTLETGVIARQADAAVLASMGDTTVLVTVVGKKEADPSRDFFPLTV
NYQEKTYAAGKIPGGFFKREGRPSEDETLIARLIDRPIRPLFPDGFTNEVQVIITVVSVD
PQIEPDIVAMIGTSAALAISGIPFNGPLGAARVGYINGEYVLNPGAELRENSQLDLVVAG
TQSAVLMVESEAKALPEEVMLGAVVYGHEQQQVVVNAINELKAEAGKPAWDWTAPVANEE
LVAKVKALAEEGLTAAYQIIAKHERRDAVVEVKKAAIEKLLEENPELDQRELDGLLGSLE
KKVVRSRIIKGMPRIDGREPDMVRALSVMAGVLPRTHGSALFTRGETQALVTCTLGTERD
AQKIDSIMGERTNRFMLHYNFPPYSVGETGMVGSPKRREIGHGKLAWRGINAVMPSAEEF
PYSVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKTSVAGIAMGLVKEGDDFVVLSDI
LGDEDHLGDMDFKVAGTRDGVTALQMDIKIEGITKEIMEIALQQAYGARVHILNVMDQAI
GSARDDISDHAPRITTIKINPEKIREVIGKGGATIRALTEETGTTIELEDDGTVKIASNN
ADATKEAIRRIEEITSEVEVGRIYKGKVIRIVDFGAFVNILPGKDGLVHISQIAEERVAN
VSDYLQLNQEVTVKVMEVDRQGRVRLSIKEAQQAAPEAVE
NT seq 2103 nt   +upstreamnt  +downstreamnt
gtgaatcctattgtaaaaagttttgagtatggtcaacacacagtcactctggaaacaggg
gttattgcacgccaagccgatgcagccgttctggccagcatgggcgatactacagttctg
gtgactgtggttggcaagaaagaagcagacccaagccgtgacttcttcccgctgactgtt
aactatcaggaaaagacttacgcagccggtaagatccctggtggtttcttcaagcgtgaa
ggtcgaccatccgaagatgaaacactgatcgcccgcctgattgaccgtcctatccgtcca
ctgttccctgacggcttcaccaacgaagtccaagtgatcatcactgtggtttctgttgat
ccacagatcgagccagacattgtggccatgataggtacctctgctgctttggctatttcc
ggtattccattcaatggtcctctgggtgcggcacgtgtcggttacatcaatggcgagtac
gtgctgaatcctggtgcagaattgcgtgaaaacagccagctggatctggttgttgccggt
actcagagcgccgtgctcatggtggaatctgaagccaaggccctgcctgaagaagtgatg
ctgggcgccgtggtatacggtcacgaacagcagcaggtggtggttaatgccatcaatgaa
ctcaaggccgaagccggtaagcctgcttgggactggacagctcctgttgccaacgaagag
ctggttgccaaggttaaggcgctggccgaagaaggtcttaccgccgcttaccagatcatc
gccaagcatgagcgccgcgatgcggtagttgaagtcaagaaagccgctatcgaaaagctg
cttgaggaaaaccctgagctggatcagcgtgagctggacggcctgctgggtagcctggag
aagaaagtggttcgtagccgcatcatcaaaggtatgcctcgtatcgatggtcgtgagcct
gatatggtgcgtgccctgtctgtgatggccggcgtgctgccacgtactcacggtagcgcc
ctgtttacccgtggtgaaactcaggctctggtgacctgtactctgggtaccgagcgtgat
gcgcagaagattgactccatcatgggcgagcgtaccaaccgcttcatgctgcactataac
ttccctccatactctgtcggtgaaaccggcatggtgggttcaccaaagcgtcgtgaaatc
ggtcacggtaagctggcatggcgtggtatcaacgcagtaatgccttctgccgaagaattc
ccatatagcgtgcgcgtggtttctgaaatcactgaatccaacggctccagctctatggcg
tctgtgtgtggtacttctctggcgctgatggatgccggtgtacctatcaagacttctgtt
gccggtatcgccatgggtctggtgaaagaaggtgatgacttcgtcgtactgtctgacatt
ctgggcgatgaagatcacctgggtgatatggactttaaagtggccggtacccgtgatggt
gtaaccgcactgcagatggatatcaagattgaaggtatcaccaaggagatcatggaaatt
gcgctgcagcaagcctatggtgcccgtgtgcatatccttaacgtaatggatcaggccatt
ggctctgcccgtgacgatatctccgaccatgctccacgtatcactaccatcaagatcaac
cctgagaagatccgtgaagtgataggtaagggcggtgcaactatccgagcactgaccgaa
gagacaggtaccactatcgagttggaagacgacggcactgtgaagattgcttcaaacaat
gccgatgccaccaaggaagctatccgccgcatcgaagagatcacctctgaagtggaagtg
ggtcgcatctacaagggtaaagttatccgcatcgttgacttcggtgccttcgttaacata
ctgcctggtaaagatggcctggtacacatctctcaaatcgctgaagagcgtgtggccaat
gtatccgactacctgcaactgaaccaggaagttaccgttaaggtaatggaagtggatcgt
cagggccgtgtacgtctgtctatcaaggaagcacaacaagccgctccagaagcagtcgag
taa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (18)   

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