KEGG   Salinimonas sediminis: D0Y50_19390
Entry
D0Y50_19390       CDS       T05624                                 
Symbol
gyrB
Name
(GenBank) DNA topoisomerase (ATP-hydrolyzing) subunit B
  KO
K02470  DNA gyrase subunit B [EC:5.6.2.2]
Organism
salm  Salinimonas sediminis
Brite
KEGG Orthology (KO) [BR:salm00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:salm03032]
    D0Y50_19390 (gyrB)
   03400 DNA repair and recombination proteins [BR:salm03400]
    D0Y50_19390 (gyrB)
Enzymes [BR:salm01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     D0Y50_19390 (gyrB)
DNA replication proteins [BR:salm03032]
 Prokaryotic type
  DNA Topoisomerases
   D0Y50_19390 (gyrB)
DNA repair and recombination proteins [BR:salm03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      D0Y50_19390 (gyrB)
SSDB
Motif
Pfam: DNA_gyraseB GyrB_insert DNA_gyraseB_C Toprim HATPase_c GyrB_hook HATPase_c_3
Other DBs
NCBI-ProteinID: AXR08323
UniProt: A0A346NS16
Position
complement(4434004..4436427)
AA seq 807 aa
MSEQNNYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGYCSE
IVVQIHTDGSVSVYDNGRGIPTEIHSEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV
GISVVNALSSKLKLRIRRGGKSHEQEYHNGVPQSPLAVIGETDKSGTEVRFWPSHDTFTN
TEFHYEILAKRLRELSFLNSGVAIRLKDERDGKEDLFKYEGGIRAFVEYLNQKKTPIHDK
VFHFTMEREEDGIAVEVAMQWNDSFQENVFCFTNNIPQRDGGSHLAGFRGALTRTLNNYM
EQEGLNKKAKTSATGDDAREGLTAVVSVKVPDPKFSSQTKDKLVSSEVRPAVESTMNEKL
SEFLLENPSIGKIISTKIIDAARAREAARKARDMTRRKGALDLAGLPGKLADCQEKDPAL
SELYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKMLSSQEVATLITALGCG
IGRDEYNPDKLRYHSIIIMTDADVDGSHIRTLLLTFFYRQMPEIIERGYVYIAQPPLYKV
KKGKQEQYLKDDDALTSYLTNIALDGTLLHTSEDEPGISGVGLENLVKQYQNVEKMIERL
HRIMPPAILYRMIYSPTLNLADLKDESTLDSVADKFIKSLNDKENDGATYRYEIKRDEEL
SEYFILIVMRMHGIDYEYKIGHDFIESTEYTRIRDLNEVINGMMGDTAYVQRGERRQPID
SFKSAIEWLMNEAKKGQYIQRYKGLGEMNPEQLWETTMDPAGRRMLQVTIEDAIGCDQLF
TTLMGDQVEPRREFIEANALKVENLDV
NT seq 2424 nt   +upstreamnt  +downstreamnt
atgtcagagcagaataactacgactcgtccagcattaaggtgctaaagggcctggatgcc
gtaagaaagcgtccgggaatgtacatcggcgataccgatgatggcactgggttacaccat
atggtttttgaagttgtggataattccatagatgaggccttagccggctactgttcagaa
attgtagttcagatacataccgacggttctgtatctgtatatgataatggacgtggtatc
cctactgaaattcattctgaagaaggtgtgtccgcagcagaagttatcatgacagtactg
catgcgggcggtaagtttgatgataactcttacaaagtatctggcggcctgcacggggtg
ggtatatcggtagtaaacgccttgtcgagtaagctcaagcttcgtattcgccgtggcggt
aaatcgcacgaacaggaatatcataatggtgtaccccagtcacctttagcggtgataggc
gaaacagacaagtcaggaactgaggtgcgcttttggcctagccacgatacgtttaccaat
actgagttccactacgagattttagcaaagcggcttcgcgagctatcattcttaaactct
ggcgtggcgattcgtcttaaagatgaacgtgacgggaaagaagatctgtttaaatatgaa
ggtggtattcgtgctttcgtagaatacctgaaccagaagaaaacacctatccacgataaa
gtttttcattttacgatggagcgggaagaagacggtattgcagttgaagtcgcaatgcaa
tggaacgatagcttccaggaaaacgttttttgttttaccaacaatattccacagcgtgac
ggtggttcacatttagcgggcttccgtggggcgcttacccggacgttaaataattacatg
gagcaggaaggcttaaataaaaaagccaaaaccagcgccaccggtgatgatgctcgtgaa
ggattaacagcggtagtctcggtgaaagtacctgacccgaaattttcctcacaaacaaaa
gataagctggtttcatcagaggttcggcctgcagttgaatctaccatgaacgagaagcta
tctgagtttttgttggaaaacccttctattggtaagattatttcgactaagattattgat
gcagcgcgagcacgagaagctgctcgtaaagcgcgggatatgaccagacgtaaaggtgca
ttagatttggctgggcttccaggtaagcttgctgactgccaggaaaaagaccccgcctta
tccgaactctatatagtggagggcgactctgctggcggttcagctaagcaggggcgtaac
cggaaaaaccaggctatattgccgcttaaaggtaaaatcctgaacgttgaaaaggcccgc
ttcgataagatgttgtcttctcaggaagtcgccacgcttattactgcattaggttgtggc
atcggcagagacgaatacaatccagataaactacggtatcacagcattatcatcatgaca
gatgctgacgtggatgggtcgcatattcgtactttgctattgaccttcttctaccgtcaa
atgcctgaaattatagagcgtggctatgtgtatatcgcccagccgccgctatataaggtt
aagaaaggtaagcaagagcaataccttaaagatgacgatgcgttaaccagttatcttact
aacatcgctttggatgggacgttattgcacaccagcgaagatgaaccaggtatctcgggc
gttgggttagaaaatctagttaaacaataccaaaacgtagagaaaatgatcgaacggttg
catcgaatcatgcctcctgccatcttgtatcgaatgatttattctcctacgttaaacctg
gctgatcttaaagatgaaagcacattagatagcgtagcagataagttcatcaagtcgctt
aacgataaagagaatgatggcgccacgtatcggtatgaaattaagcgcgatgaagagttg
agcgagtactttattcttatcgtcatgcgcatgcacggcatagattacgaatacaaaatt
ggacacgactttatagagtctacagaatacacccgtattcgagatttaaatgaagtgatc
aatggaatgatgggcgataccgcctacgtgcaacggggcgagcgccgccagcctattgac
tcctttaagtcggctattgagtggttgatgaacgaggctaaaaaaggccaatatattcag
cgctacaaagggctaggggagatgaacccagagcagctatgggaaactacgatggacccg
gctgggcgccgtatgctgcaggtgactatcgaagacgctatcggatgtgaccagttattc
acaacactgatgggcgaccaggttgaaccaagacgtgagtttatcgaagccaatgcactg
aaggtagaaaacctcgacgtgtag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

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