KEGG   Salinisphaera sp. LB1: SALB1_0423
Entry
SALB1_0423        CDS       T05476                                 
Name
(GenBank) DNA-directed RNA polymerase omega subunit
  KO
K03060  DNA-directed RNA polymerase subunit omega [EC:2.7.7.6]
Organism
saln  Salinisphaera sp. LB1
Pathway
saln03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:saln00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SALB1_0423
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:saln03021]
    SALB1_0423
   03400 DNA repair and recombination proteins [BR:saln03400]
    SALB1_0423
Enzymes [BR:saln01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SALB1_0423
Transcription machinery [BR:saln03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SALB1_0423
DNA repair and recombination proteins [BR:saln03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SALB1_0423
SSDB
Motif
Pfam: RNA_pol_Rpb6
Other DBs
NCBI-ProteinID: AWN14630
UniProt: A0A2Z3J586
Position
complement(467875..468186)
AA seq 103 aa
MARVTVEDCLEHVDNKFQLAAIASKRARQLARGAHSQLDWEDDKPSVLALREIAEGLISR
DILKEPDLPPMSSSMEAPRPAEPGEEDFQADEKRGVKKAGADE
NT seq 312 nt   +upstreamnt  +downstreamnt
atggcgcgcgttaccgttgaagattgtctcgaacacgtcgacaacaagttccaattggcg
gccatcgcgtccaagcgggctcggcagctcgcgcgcggcgcgcattcccagctggactgg
gaggacgacaagccgtctgtgctcgcgctgcgcgagatcgccgaaggcttgatcagccgc
gacatcctgaaagagccggatctgccgcccatgtcgtcgagcatggaagcgccgcgcccg
gccgagcctggcgaggaagatttccaggccgatgaaaaacgcggcgtgaagaaggccggc
gccgacgaatga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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