KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111955735
Entry
111955735         CDS       T05762                                 
Name
(RefSeq) RNA polymerase II subunit A C-terminal domain phosphatase isoform X1
  KO
K15732  RNA polymerase II subunit A C-terminal domain phosphatase [EC:3.1.3.16]
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:salp00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:salp01009]
    111955735
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:salp03021]
    111955735
Enzymes [BR:salp01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.3  Phosphoric-monoester hydrolases
    3.1.3.16  protein-serine/threonine phosphatase
     111955735
Protein phosphatases and associated proteins [BR:salp01009]
 HAD phosphatases
  Fcp/Scp phosphatases
   111955735
Transcription machinery [BR:salp03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Others
     111955735
SSDB
Motif
Pfam: FCP1_C NIF PTCB-BRCT BRCT Biotin_lipoyl RTT107_BRCT_5 Nairovirus_Gn
Other DBs
NCBI-GeneID: 111955735
NCBI-ProteinID: XP_023831807
Position
LG31:complement(1550891..1667547)
AA seq 1036 aa
MEEPADSGGGGAAQGPMAQVAEIRCPIAARPMRLLEWKVKPGSLVNVDSVLALCAPIPPE
KEAGSHPPEQPNRLSEKKLKSDRAGVVKELCCQLGQVISPGVVVVRVEECSHPIVMKGLC
AECGQDLTQMQTNNGRQQALISTANVSMVHSVPELMVSSEQAEQLGREDQQRLHRNKKLV
LMVDLDQTLIHTTEHHCQRMSNKGIFHFQLGRGEPMLHTRLRPHCKDFLEKIAKLYELHV
FTFGSRLYAHTIAGFLDPEMKLFSHRILSRDECIDPFSKTGNLRNLFPCGDSMVCIIDDR
EDVWKFAPNLITVKKYIYFKGTGDINAPPGSKEAQQGRKAGSQASRPAEASEPAVTSGTT
GPKTGPSGGSSTSEEQSNGLKKQRAKDHNNGGRGESTAPSPTQGAAANERTQPDGGEAVE
EERGQGEGAEASAAAQVSDRMNVKDEMKAEGNGEGKDGSRTLGSGEEAPLPGGVNSSSTP
LPPSSTPPDLHEPNSNLDFDLSSDSDADSLTGKPPSSDNERDGVSSQTKKSKQEGAEQAA
VEEPSGGAGGKEGENSSAVVGETSDETSGAEVVFPPDPEQENGRLERREAETESQNSEQS
GVTMGEESLDPSMEEEEEEEVDVDKDDHLIYLEEVLERIHGEYYARYNGFLRKERPEMPD
IRKIVPELKARSLEGTTIVFSGLYPTNYPMERTRENYHAKALGAKIGKGLLLRSKDPGRT
THLIAARAGTEKVRQAQGCKHLHVVNPDWLWGCLERWERVDESLYPLKEDYTKTQRSNSP
VTFPDLQGSFQNPRFPPAPLHHHPPPAAPEMRTYDPVTGKLIRRGTQASRPPSYLQASMS
AAHGDQTSLRGGQKDQQGETAGPSSRDDEQPGPSCRRRERQPSMSETNPLYTFCKEDLDS
MDKEVDDMLDEESDEEGDGRGKKTRELEEEEEMEEEAEGQQPQGSGQSTEGEKQHHHHQQ
GLATVVEETEKAQMPPSDQGGMTTGSVSRGQKRKLEDEEGESADESTKDSNEEEEGSSSE
ADEMAAALDAELNDFM
NT seq 3111 nt   +upstreamnt  +downstreamnt
atggaggagcccgcagattccggcggtggcggggcagcacagggccccatggcgcaagtg
gcggagatccgctgcccaatagcagcgcgtcctatgcggctgctggaatggaaagtcaaa
cccggttccctcgtcaatgtggattcggtgttggcgttatgtgctcccatcccaccggag
aaagaggccgggtcccatcctccagaacagcccaatcggctgtcagagaagaagctgaaa
tcggaccgagctggagtggtgaaagagctatgctgtcaacttggacaagtcatatcgcct
ggtgttgtggttgtaagagtagaagaatgcagccatcccattgtgatgaaaggcctgtgt
gctgaatgtggccaggacctcacacagatgcagaccaataatgggaggcagcaggctctc
atctccacggcaaatgtttccatggtgcacagtgtccctgagttgatggtcagctctgag
caagcagagcagctgggcagagaggaccagcagagactccacaggaacaagaagctggtt
ctgatggttgatctggaccaaaccctgatccacaccaccgagcatcactgccagcgcatg
tccaacaagggaatcttccacttccagctgggacggggggagcccatgttacacacgcga
ctgcgtccgcactgcaaagacttcctggagaagatcgccaagctctacgagctgcatgtc
ttcaccttcggaagccgcctctatgcacacaccatcgcaggcttcctggaccctgagatg
aagctgttttcccacaggatcctgtccagagacgaatgcatcgaccccttctccaagaca
gggaacctgaggaatctgttcccatgtggagactcgatggtatgtattatagatgaccgg
gaggatgtgtggaagtttgctcccaacctgatcactgtgaagaaatacatctacttcaag
gggacaggagacatcaacgccccgcccgggtctaaagaggctcagcagggaaggaaagca
ggcagccaggccagccgaccagcagaggcctcagaaccagcagtaacgtcagggacaacc
gggcctaaaacagggccatctggagggtcgtctacatcagaggagcagagtaacggtctt
aagaaacaacgggccaaagaccacaacaatggagggaggggggagtcaacagcaccctca
cccactcagggagcagcagccaatgaacggactcaaccggacggtggcgaggctgtggag
gaggagcggggtcagggcgagggagccgaggccagcgcggcagcacaggtgagcgacagg
atgaatgtgaaagatgagatgaaagcggaggggaatggagaggggaaggatggcagcagg
acattgggctcaggggaggaagctccccttccgggtggggtgaactcatcctccactcct
cttcctccatcctccactcctccagacctccatgagcccaacagcaacctggactttgac
ctgtccagcgacagtgacgctgactctcttacgggtaaacccccctcatcagacaacgag
agggacggggtgtccagccagaccaagaagtccaaacaggaaggggcggagcaggcagca
gtagaggagccatcaggcggggctggaggaaaggagggggagaacagctccgcggtagta
ggggagacctcagatgagacgtctggggcagaggttgtcttccctccagacccggagcag
gagaacgggcgcttagagcggagggaggctgagacagagtcccagaacagtgaacagtca
ggagtcaccatgggggaggagtctctggacccgagcatggaggaggaggaagaggaggag
gtggacgtggacaaggatgaccacctcatctacctagaagaggtgctggagcgtatccat
ggagaatactacgcccgctacaacggcttcctcaggaaggaacgcccagagatgcctgac
atcaggaagatcgtcccggagttgaaggcccggagcctggagggcaccaccattgtgttc
tctggactgtaccccaccaattaccccatggagagaaccagggagaattaccatgccaag
gcccttggagcaaagataggaaaaggcctcctgctccgctctaaagaccctggcagaacc
acccacctcattgctgctagagcaggtacagagaaggtgcgtcaggcccaaggctgtaaa
catctccatgtggtgaatcctgactggctgtggggatgtctggagcgctgggaaagggtg
gatgaatcactgtatccactgaaggaggactacaccaagacccaacggagcaacagccca
gtcacgttccctgacctccaaggctccttccagaacccccggttcccccccgcccccctc
caccaccaccctcctccagctgcccctgagatgcggacgtacgacccggtcacggggaag
ctgattcgccgtgggactcaggcctccagaccaccatcttacctccaggcctccatgtct
gctgcccacggcgaccagacctcgctcagggggggtcagaaggaccagcagggggagacg
gcgggtccctccagtcgagacgacgagcagcctggaccctcctgccggcggagggaacgc
cagcccagcatgtcagagaccaaccccctctacacattctgtaaagaagacctggacagc
atggacaaggaggtggacgacatgctagatgaggagagcgatgaggagggagatggccgg
gggaagaagacaagggagttggaggaggaagaggagatggaggaggaagcagaggggcag
cagccccagggtagtggacagagcactgagggagagaagcagcaccaccaccaccaacag
ggtctggccaccgttgtagaggagacggagaaggcacagatgccacctagtgaccagggc
ggtatgacgacgggcagcgtgtcaaggggacagaagcgcaagcttgaggacgaagagggg
gagtcggcggacgagtccaccaaggattctaacgaggaagaggaaggaagcagctcagag
gctgatgagatggccgctgctctggatgcggagcttaacgacttcatgtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (7)   
   Pfam (7)   
All databases (22)   

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