KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111961223
Entry
111961223         CDS       T05762                                 
Name
(RefSeq) eukaryotic initiation factor 4A-III
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03013  Nucleocytoplasmic transport
salp03015  mRNA surveillance pathway
salp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    111961223
  09122 Translation
   03013 Nucleocytoplasmic transport
    111961223
   03015 mRNA surveillance pathway
    111961223
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:salp03019]
    111961223
   03041 Spliceosome [BR:salp03041]
    111961223
   03009 Ribosome biogenesis [BR:salp03009]
    111961223
   03012 Translation factors [BR:salp03012]
    111961223
Messenger RNA biogenesis [BR:salp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     111961223
   mRNA cycle factors
    Stress granule specific factors
     111961223
Spliceosome [BR:salp03041]
 Complex C
  Other components
   EJC/TREX
    111961223
Ribosome biogenesis [BR:salp03009]
 Eukaryotic type
  90S particles
   Helicases
    111961223
Translation factors [BR:salp03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    111961223
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 AAA_22 AAA_30 Flavi_DEAD TniB
Other DBs
NCBI-GeneID: 111961223
NCBI-ProteinID: XP_023839086
Position
LG1:complement(11314584..11327363)
AA seq 406 aa
MEVATVPRTRRLLKEEDMTKIEFETSEEVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQ
QRAIKQIIKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKV
LLALGDYMNVQCHSCIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLV
LDEADEMLNKGFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRDE
LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS
SMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRI
GRSGRYGRKGVAINFVKNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq 1221 nt   +upstreamnt  +downstreamnt
atggaagtagccaccgtaccgcgcacgaggcgtctattgaaggaggaagatatgaccaag
atcgagtttgagaccagcgaggaggtcgatgttacgcctaccttcgacacaatgggccta
cgagaggatctcctccgtgggatctacgcatacggtttcgagaagccttccgcaatccaa
caaagagcaattaaacagatcatcaagggtagagatgtcattgcacagtctcagtcagga
acaggaaagactgccacgttttgcgtatcagtgctgcagtgtcttgacattcaggtgcgt
gaaacccaagcactgatcctggctcccaccagagagttggctggacagatacagaaggtg
ctcctggccctcggtgactacatgaacgtccagtgtcattcctgcatcggagggacaaac
gtgggtgaggacatccgtaaactggactatggccagcacgtagtagcagggacccctggg
agagtgtttgatatgatccgcaggaggagtttgaggacgcgtgccatcaagatgctggtg
cttgacgaagcagacgaaatgctcaacaagggtttcaaagagcagatctacgacgtgtac
cggtacctgccccccgccacccaggtgtgtctgatcagcgccacgctgccccacgagatc
ctggagatgaccaacaagttcatgaccgaccccatccgcatcctggtcaaacgtgatgag
ttgactctggagggcatcaagcagttcttcgtggcagtagagagggaggagtggaagttt
gacaccctgtgtgacctgtatgacaccctcaccatcacacaggctgtcatcttctgcaac
accaagcggaaggttgactggctgactgagaagatgagggaggccaacttcactgtttcc
tccatgcatggagacatgccccagaaggagagagagtccatcatgaaagagttccggtcc
ggcgccagccgagtgcttatctcaactgatgtgtgggcccgaggtctggatgtgccccag
gtgtccctcattatcaactacgacctgcccaacaacagagagctgtacatccacaggatt
ggccgatcaggtcgttacggccgcaagggtgtggccatcaactttgtgaagaacgacgac
atccgtattctccgtgacattgagcagtactattccacacagatcgatgaaatgccaatg
aacgtggctgacctgatctaa

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (8)   
   Pfam (8)   
All databases (23)   

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