KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111966226
Entry
111966226         CDS       T05762                                 
Name
(RefSeq) collagen alpha-3(IX) chain-like
  KO
K08131  collagen type IX alpha
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp04510  Focal adhesion
salp04512  ECM-receptor interaction
salp04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:salp00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    111966226
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    111966226
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    111966226
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:salp00535]
    111966226
Proteoglycans [BR:salp00535]
 Extracellular matrix (ECM) proteoglycans
  Others
   111966226
SSDB
Motif
Pfam: Collagen
Other DBs
NCBI-GeneID: 111966226
NCBI-ProteinID: XP_023846464
Position
LG7:4684154..4705224
AA seq 678 aa
MSIFSALGLLLLCQLLASSTAQRPGPRGAVGPPGPLGPAGKDGTDGKDGPAGLSGKAGPK
GKAGGAGGPGNPGLPGLPGVDGLTGADGPAGKDGPPGEFGDAGPPGPGGPPGQRGPGAPG
LPGANGLAGGSGPQGPAGPEGLAGLAGLPGPDGPPGLPGALPDGSGDLLCPAICPPGPSG
PPGMPGFKGHTGHKGDKGELGKDGEKGYAGPSGPPGIPGTVGLQGPRGLRGLQGPMGAVG
DRGLPGFRGKPGIAGVIGKTGDVGEKGPEGFRGPKGEIGKIGPKGVPGGSGPKGDPGIPG
RDGKDGTQGLDGEKGDAGRNGVPGEKGPNGLPGLQGKAGAKGATGGVGDPGEMGEAGPSG
EPGIPGDIGIPGERGEAGPRGVAGGIGPAGNIGVRGSKGFQGIKGALGDPGLPGPTGIRG
GFGERGPVGASGPKGDVGVAGADGLPGENGEPGPFGPVGQKGESGKRGELGPKGVVGPQG
ELGARGVPGKPGLMGFQGEQGLSGIAGKIGVPGKLASEQHIRELCGSMIDDQIAKLASNL
RRPLSPGQVGRPGVAGSPGKPGETGSIGHPGSRGSPGYRGLPGDLGDPGPRGDLGEQGDK
GPIGKAIEGPIGDQGYQGIPGVFGIVKDGRDGSPGDPGEPGEAGRTGRTGHSGSPGICDT
TACQGANVHGKTSNPKNH
NT seq 2037 nt   +upstreamnt  +downstreamnt
atgtctatattctcagctctcgggctgctcttgctgtgccagcttttggcatcatctaca
gcacagagacccggcccacgaggagcagtcgggccgccaggacccctgggacccgcaggg
aaggatggtactgacggcaaagatggccctgctggactttcagggaaagctggacccaag
gggaaagcagggggagcaggaggaccagggaacccaggcctgcccggcctcccaggggtg
gacggattgacaggtgctgatgggcctgcagggaaggacggtcctccaggggagtttggc
gatgctggacctcccgggccaggtggacctcctggtcagaggggaccgggagctccagga
ctaccaggagccaatgggcttgcgggcggaagcgggccacagggaccagcaggccctgag
ggtcttgcaggattggctgggcttcccggccctgacggacccccaggtcttcctggggct
ctccctgatggcagtggagatctgttgtgtcctgccatctgtcctcctggcccctccggc
cctccaggaatgcctggattcaagggtcacacaggacacaaaggagataagggagagctc
gggaaagacggcgagaagggttatgctggcccatctggtcctccaggtattcccggcact
gtgggcctgcagggtcctcgtggtttgaggggacttcagggcccgatgggggcagtagga
gacaggggtttacccggtttccgaggcaaacctggtattgctggcgtcatcggcaagaca
ggtgatgttggagagaaaggaccagagggatttagagggccaaagggcgagattggcaaa
attggtccaaagggagttcccgggggatcaggacctaaaggggaccctggcatccctggc
agagacgggaaagatggcacccagggactggatggcgagaagggcgacgccgggcggaat
ggggtacccggtgagaaaggacccaacggccttcctggtttacaaggaaaggctggcgca
aagggagccacaggaggagttggcgacccaggagagatgggagaggcagggccgtctgga
gagccaggtattcctggcgacatcggtatcccaggagagaggggcgaggcgggacccaga
ggagtggctgggggcatcggaccagcgggcaacatcggggttcggggcagcaaaggcttc
cagggaataaagggggctctgggggaccctggccttcccggaccaaccggaatccgcggc
ggatttggtgagaggggtccagtcggagcatcaggccctaaaggagacgtgggtgtggca
ggagctgatggtttgcccggggagaatggagaacctggtccatttggtccagttggccaa
aaaggagagtctgggaagcgtggagagctgggacccaagggcgtggtgggaccacaggga
gagctcggagccagaggggttcctgggaaaccaggcctcatgggctttcagggtgaacag
ggtctgtccggaatcgctggcaagattggtgttcccggtaaactggcaagcgaacagcac
atcagagaattgtgtggatctatgattgatgatcagattgcaaagctggcttccaacctc
agaagacccctgtcccctggccaagtgggtcgccccggcgttgccggatctccagggaag
ccaggcgagactgggtctatcggtcaccccggctcccgtggatctcctggctacagagga
ctgcctggagacctcggagaccccggtcccagaggtgatcttggtgaacagggtgacaag
ggacccattggaaaagccatcgaagggcccattggagaccarggataccaaggtatccca
ggagtatttggaatcgtcaaagacgggcgtgacggatccccrggagatccaggagaaccc
ggagaggcaggtaggacaggaaggacygggcactcgggctcsccaggaatctgcgacact
accgcctgccagggggcaaatgtccatgggaaaacctccaatcccaagaaccattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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