KEGG   Salvelinus sp. IW2-2015 (Arctic char): 111977737
Entry
111977737         CDS       T05762                                 
Name
(RefSeq) TATA-binding protein-associated factor 172
  KO
K15192  TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Brite
KEGG Orthology (KO) [BR:salp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:salp03021]
    111977737
Transcription machinery [BR:salp03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Others
     111977737
SSDB
Motif
Pfam: DUF3535 SNF2-rel_dom HEAT Helicase_C Vac14_Fab1_bd HEAT_2 HEAT_EZ
Other DBs
NCBI-GeneID: 111977737
NCBI-ProteinID: XP_023863081
Position
LG18:complement(28308614..28372004)
AA seq 1857 aa
MAVSRLDRLFILLDTGTTPVTRKAAAQQLGDVVKLHPHELNNLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWNPSPKPKEESCAEDPEDSYSDRLSFYRFDISRLLKHGASLLGSA
GAEFEVEDDKSGEVDPKERLTRQRKLLQRKLGLDIGAAIGMDTMELFNDEDLDTQYISTP
IGPKGQGGKGSGPCSSSHNHVPMQAAEIIDSEFRPGMSNRQKNKAKRMAKLVAKQRSKDM
DPNERSNDSFDGEPEEKRRKTTNVVIDQPAMEHKVLIDTVPDNSSLLDETQEWPLESFCE
ELCNDLFNPSWEIRHGAGTGLREILKSQGAGGGKLVECTAEQMARQHQEWLEDVVIRLLC
VFALDRFGDFVSDEVVAPVRETCAQTLGVALRHMNDSGVAMTVDILLKLLTEDQWEVRHG
GLLGIKYALAVRKDLISAMLPRVLPAITEGLQDLDDDVRAVAAAALIPVVDGFVQLLPNK
VPFIVNTLWDALLELDDLTASTNSIMTLLSSLLTYPQVRQCSMQQSLTVLVPRVWPFLRH
TISSVRRAALETLFTLLSKADQSCALWLNQVLQDMLRHIFQSCILESNQEILDLIQKVWT
ELLRQAPQQYVVAASCPWMGAWLCLMMQASHIPIDINMLLEVKARCKEKAGGKPRQGALV
QVKETVQEYIAGAETVTEDPITRDYVVTRARLMAAKLLGALCRCMCDPQVNSSSQDIRPA
ESLGQLLLFHLNSKSALQRIAVALVLCEWAAVQKECQVVSALVQPRLLGILSEQLYYDEI
AIPFTRMQNECKQLISLLADAQIDVRDRLNCSVFTIDQASELVTTIFTESTVGLNMKSKQ
FQPLDGKRQQTQSTVDETSVEWQQLHLRVHMFTACAVVNLQALPDKLNPVVRPLMEAAKR
EENTLVQGYAASFIAKLLQQCAGRQPCPNSKIVKNLCSSVCVDPLLTPSSACPVSTTQET
AKAGMSEKECMHHVVNKTKGIITLYRHQRAAFAITSKRGPTPKTPKTPTTELPPGSTITT
DTDENKKNSLVQRRGAEFSLMTVARHFGQELTGSLPYLWESMVGPLRAVVEDNEGIDWKL
QMERGDAAAQXLVNSLQVLEVTAGAMAPELKPLLLEHLPHLFTCLQHPYTAVRHMAARCV
GVLSKIATMETMHLFLERVLPWLGCIEDSTKQEGAIEAMACVMEQLDVDIVPYIVLLVVP
VLGRMSDPSDSVRFMATQCFATLIRLLPLEAGIPDPPTMSDDLIRQKARERHFLEQLLDS
RKLENYKIPVPIQAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDHY
LRAQEYAKTKAADRTPLPSLVVCPPTLTGHWVDEVGKFCTKEYLNPLHYTGPPTERARLQ
HQVKKHNLVVASYDVVRNDIDFFRNVKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRVI
LSGTPIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAME
ALHRQVLPFLLRRMKKDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKVGVEDTIST
ASTQEEEKPKLKATGHVFQALQYLRKLCNHPGLVLLPQHPEYKRITDQLAAQHSSLRDIQ
HSPKLSALKQLLLDCGLGSSGSAEGTEAVVAQHRVLIFCQLKSMLDIVEHDLLKPQLPTV
TYLRLDGSVQASLRHAIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMR
DLQAMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKMNIANAVISQENASLQSMGTD
QLLNLFTLDKDGKDDKGESSSGGKASIKNVLDGLGDLWDQQQYDTEYNLDSFMHTLH
NT seq 5574 nt   +upstreamnt  +downstreamnt
atggccgtttcaaggcttgatcgtctttttatcctgcttgacactggaactactccggtg
acgaggaaggctgctgctcaacagctgggagatgtggtcaaactccacccacatgagctc
aacaacctgttgtcgaaggttttgacatacctgagaagtccaaactgggacacgcgtatc
gctgcgggtcaagcagtggaggccattgtgaagaatatcccagagtggaacccatcaccc
aagcccaaagaagagtcatgtgcggaggacccggaggactcctactctgaccgtttgagt
ttctaccgtttcgacatctcccgcctcctcaaacatggtgcttctctactcggttctgcc
ggcgctgagtttgaggtcgaggatgacaagtctggtgaagtggaccctaaggagcgtctc
acccgccagaggaagctgctgcagaggaagctgggactggacataggtgccgcaatcggc
atggacacgatggagctgttcaatgatgaggacctggacacccagtacatctccacgccc
attggccctaagggacagggagggaagggctctggaccctgctccagctcccacaaccac
gtgcccatgcaggcggcagagataatagactcagagtttcgaccaggcatgagcaaccga
cagaagaacaaggctaagaggatggccaagctagtggccaagcagcgatccaaagacatg
gatcccaacgagagaagtaatgacagttttgatggggagcccgaggagaagcgcaggaaa
actaccaacgtagtcatcgatcaaccggcaatggagcataaagtcttaatcgatactgtt
ccagacaactccagcctcttagacgagacccaggagtggcccctggagagcttctgtgaa
gagctctgtaacgacctcttcaacccctcatgggagattcgtcacggtgcaggcacaggc
ctcagggagatcctcaagtctcaaggtgctggaggtgggaagctggtggaatgcactgca
gaacagatggcgcggcagcaccaggagtggctggaggacgtggttatcaggctgctctgt
gtctttgctctggaccgttttggagactttgtctctgatgaggtggtggctccggtcaga
gagacttgtgcccagacactgggtgtggccttgcgccacatgaatgacagcggcgttgcc
atgactgtagacatcttgctgaagctgctgacggaggaccagtgggaggtccggcacgga
ggtcttctgggcatcaagtatgccctggctgtccgaaaggacctgatctccgctatgctt
ccgcgggtgctccctgccatcacagaggggctgcaggacctggatgatgacgtcagagcg
gtggcagccgcggccctcatccctgtggtggacggctttgtacagctactccccaacaag
gtcccgttcatagtgaacaccctgtgggatgctctcctggagctggatgacctgacggcc
tccacaaacagcatcatgaccctactgtcctcgctgctcacctacccccaggtccgacag
tgcagcatgcagcagtccctaacggtccttgtccctcgggtctggccattccttagacac
accatatcatcagtcaggcgagccgcattagagaccctctttaccttactatccaaagct
gaccagagctgcgcgctatggctcaaccaggtcctgcaagacatgctccgacacatcttc
cagtcttgcatcctggagagcaatcaggagatcctggacctcattcaaaaggtgtggaca
gagctgctgcgccaggcccctcagcagtacgtggtggcagccagctgtccctggatgggc
gcctggctctgcctgatgatgcaagcctctcacatccccatagacatcaacatgctgctg
gaagtcaaggctcgctgcaaggagaaggccggaggtaagcctcgccagggagccttggtt
caggtgaaggagactgttcaggagtatatcgctggggcggaaactgtgaccgaggaccca
attacgcgggactatgtggtgacacgggctcgcctcatggctgcaaaactgttgggggcc
ttgtgtcggtgtatgtgcgacccgcaggtcaactcatcctcacaggacatccgaccggct
gagtcgctgggccagctgctcctcttccacctcaactccaagtctgccctgcagcgcatc
gctgtggccctggtcctctgtgagtgggctgctgtgcagaaggagtgtcaggtggtgtca
gccttggtccagcctcgactcttaggcatcctgtcagagcagctgtactacgacgagatc
gcaattcccttcacacgcatgcagaacgagtgtaagcagctcatctccctgctggccgac
gctcagatcgacgtgcgcgaccgcctcaactgcagtgttttcaccatcgaccaggccagc
gaactggtgaccaccatcttcaccgagtccaccgtgggtctgaacatgaagtccaaacag
tttcagccactggatggcaagcgtcagcagacccagtccacagtggacgagaccagtgtg
gagtggcagcagctgcacctgcgagtccacatgttcaccgcctgcgccgtggtcaacttg
caggcgctgccagacaagctgaacccggtggtgcgtcctctgatggaggcggctaagcgg
gaggagaataccctggtgcagggctatgccgcctccttcattgcgaagctgctgcagcag
tgtgctggtaggcagccatgtcccaattccaagatcgtcaagaacctgtgttcatcggtc
tgcgtggaccccctgctcacgccctcctcggcrtgtccggtgtccacgactcaggagact
gctaaagctggaatgtcggaaaaagaatgcatgcaccacgtggtcaataagaccaagggc
atcatcaccctgtaccgccaccagagggcagcatttgccatcaccagcaaaaggggcccc
acccccaaaacccccaagacacccaccactgaactgccccccggcagcaccatcaccaca
gacaccgatgagaataaaaaaaacagtctcgtccagagaagaggcgccgagttctctctg
atgacggttgccaggcactttggccaggagctgacagggtcactgccctacctgtgggag
tccatggtgggacctctgagggctgtggtggaggacaatgaaggcatagattggaagctc
cagatggagaggggggatgctgcggcccaggawctggtcaactcactgcaggtcctagag
gtcactgctggggccatggcccccgagctcaaacctctgttgttggagcacctgccccac
ctgttcacctgtctgcagcatccgtacacggccgttcgtcacatggcggcgcgctgcgtg
ggcgtgctcagtaagatcgctaccatggagaccatgcacctgttcctggagcgtgtgctt
ccatggctagggtgcatcgaggacagcactaagcaggagggggccatcgaggccatggcc
tgtgtgatggagcagttggatgtggacatcgtgccatacattgtgctgctggtggtgccg
gtgctgggccgcatgagtgaccccagtgacagcgtccgtttcatggccacgcagtgcttc
gccaccctcatccgcttgctacccctggaggctggtatcccggaccctcccaccatgtcg
gatgatctgattcgccagaaggccagagagcgtcactttctggagcagctgcttgacagc
aggaagctggagaactacaagatccctgtgcccatccaggccgagctccgcaagtatcag
caggacggagtgaactggctgtccttcctgaacaagtacaagctccacggtattctctgt
gatgacatgggcctgggcaagaccctgcagtccatctgcatcctggctggggaccactac
ctcagggcacaggagtatgccaaaaccaaggcggcagaccgcacccccctgccctctctg
gtggtgtgcccccccaccctgacaggtcactgggtggacgaggtgggcaagttctgcacc
aaagagtacctgaacccactgcactacacgggaccccctacggagcgagcacgtttacag
catcaagtgaaaaagcacaacctggtagtagcctcttacgatgttgtacggaacgacatt
gacttttttaggaatgtaaaattcaattattgtatcctcgacgagggccatgtgatcaag
aacgggaagaccaagctctcaaaagccataaagcagttggccgccaacttccgagttatc
ctatcaggaacgcccatccagaataatgttctggagctgtggtcactctttgacttcctc
atgcccggcttcctgggcacagaacgacagtttgctgcacgctacggcaaacccatcctg
gccagccgtgatgccaagagctcatcgcgtgagcaggaggccggggtgctggccatggag
gcgctgcatcgccaagttctgcccttcctcttgaggaggatgaaaaaggacgtgctgcag
gacctgccccccaagatcatccaggactactactgcaacctcagccctctacaggttcag
ctgtatgaggactttgccaagtcccgggccaaggtcggtgtggaggacaccatctctaca
gcctccacccaggaggaggagaaacccaagctgaaggccacgggccacgtgttccaggct
ctgcagtacttgaggaagctgtgtaaccacccaggcctggtgctgctgccacagcaccct
gagtacaagcgcatcacagaccagctggcagcacaacactctagccttcgagacatccag
cattcgcctaaactctcagccctcaaacagttgttgttggactgtggtctgggcagcagc
ggctcagcggagggcacagaggcggtggttgcccaacacagagtattgatcttctgtcag
ctgaaaagcatgctggacatcgtggagcacgacctgctcaagccgcagctgcccaccgtc
acctacctgcgacttgacggcagcgtgcaggcaagcctgcgccacgccatcgtctccagg
ttcaacaatgacccctccattgacgtgctgctgctcaccacgcacgtgggtggtctgggt
ctgaacctgactggtgctgacacggtggtgtttgtggaacacgactggaaccccatgaga
gacctacaggccatggaccgcgcccacaggataggacagaaacgcgtggtgaatgtgtat
cgtctgatcactcggggcactctggaagagaagatcatgggcctgcagaagttcaagatg
aacatcgccaacgcggtcatcagccaggagaacgccagcctgcagagtatgggcaccgac
cagctcctcaacctcttcaccctggacaaggatgggaaggatgataagggcgagtcgtct
tccggagggaaagcctccattaagaacgtgctggacggtctgggggacctgtgggatcag
cagcagtatgacacagagtacaacctggacagcttcatgcacacgctccactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (15)   

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