KEGG   Salvelinus sp. IW2-2015 (Arctic char): 112071921
Entry
112071921         CDS       T05762                                 
Symbol
gtf2h4
Name
(RefSeq) general transcription factor IIH subunit 4
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
salp  Salvelinus sp. IW2-2015 (Arctic char)
Pathway
salp03022  Basal transcription factors
salp03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:salp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    112071921 (gtf2h4)
  09124 Replication and repair
   03420 Nucleotide excision repair
    112071921 (gtf2h4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:salp03021]
    112071921 (gtf2h4)
   03400 DNA repair and recombination proteins [BR:salp03400]
    112071921 (gtf2h4)
Transcription machinery [BR:salp03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     112071921 (gtf2h4)
DNA repair and recombination proteins [BR:salp03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     112071921 (gtf2h4)
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 112071921
NCBI-ProteinID: XP_023995106
Position
Unknown
AA seq 462 aa
MKLRVQLQCKNLHEYLKELSPEILDRLYNHPATCLAVYRELPPLAKNYVMRMLFLDQPLP
QAAVALWVKKDSEKDHDQCVSVLSGLRLWHSQQLQGGLQGNILNPVFKDNLRIALLGGGK
SWADQGDSLGPDRHARDVESLDKYALERWEVVLHFMVGCPSAAVSQDLSQLLIQAGLMRT
EAGDAPCITSAGFQFLLLDTASQLWYFTLQYLNTAQTRGMDLVEILSFLFQLSFSTLGRD
YSVEGMSESLLTFLQHLREFGLVFQRKRKSRRYYPTRLAITLSAGVSANSSSTAMGAAPG
TGDSGFIVVETNYRLYAYTNSELQIALVALFSECLYRFPNVVVAHVTRESVQQAIANGIT
AQQILHFLRTRAHPVMLKQNPVLPPTITDQIRLWELERDRLQFSEGVLYNQFLSQADFEV
LRDRAQSLGCLVWQNVAHRVIVVSPQGHGEVKRFWKRQKSHT
NT seq 1389 nt   +upstreamnt  +downstreamnt
atgaagctgcgcgttcagttacaatgcaagaacctccatgagtatctgaaagagttgagc
cctgagatcttagaccgcttgtacaatcatccggccacatgtctggctgtctacagggag
ctccccccattggccaagaattatgtaatgcgaatgctgtttctagaccaaccccttcct
caggctgcggtggctctttgggtgaaaaaagacagtgaaaaggatcatgatcagtgtgtg
tctgtgctgtctggtctcagactatggcacagccagcagctacagggaggcctgcaggga
aacattctgaaccccgtattcaaagacaacctgagaatagcattattaggagggggtaag
tcgtgggcagaccagggtgacagtcttggtcctgacagacatgcccgtgacgtggagagt
ctggataagtatgccttggagcgctgggaggtggttctccacttcatggtgggctgtccc
agtgctgcagtcagccaggacctgtcccagctcctcattcaggctggcctcatgagaact
gaggctggagatgctccctgtatcacctcagctggtttccagttccttctcctggacaca
gcctctcagctctggtacttcaccctacagtacctcaacacggcacagactcgtggaatg
gacctggtggagattctgtccttcttgttccagctcagtttctcaacactaggcagggac
tactcagtggaggggatgagtgaatctctgctcaccttcctacagcacctgagagaattt
ggcctrgtcttccagagaaagaggaagtctagaaggtattaccccaccaggctggccatc
accctgtctgctggcgtctccgccaactcttcctccaccgctatgggcgctgccccaggg
acrggagattcaggtttcatcgtagtggaaaccaactatcggctctatgcttatactaac
tctgagctgcagatcgctttggtggctctgtttagtgagtgtctctatcgcttccctaac
gtggtggtagcccatgttaccagggagtcagtacagcaagccatcgctaacggcatcacc
gcacaacagattctccactttctaaggaccagagcacatcctgtcatgctcaaacagaac
ccagtgctgccccccaccatcacagaccagatcagactatgggagctggagagagatcga
ctacagttctctgagggagtgctgtataaccagttcctctcccaggctgacttcgaggtg
ttgcgggacagagctcagagcctgggctgtctggtgtggcagaacgtggctcacagggtg
attgtggtttcaccgcagggacacggcgaagtcaagaggttctggaaacgacagaagagt
cacacttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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