KEGG   Streptomyces ambofaciens: SAM23877_1040
Entry
SAM23877_1040     CDS       T04055                                 
Symbol
rho
Name
(GenBank) transcription termination factor
  KO
K03628  transcription termination factor Rho
Organism
samb  Streptomyces ambofaciens
Pathway
samb03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:samb00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SAM23877_1040 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:samb03021]
    SAM23877_1040 (rho)
   03019 Messenger RNA biogenesis [BR:samb03019]
    SAM23877_1040 (rho)
Transcription machinery [BR:samb03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     SAM23877_1040 (rho)
Messenger RNA biogenesis [BR:samb03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SAM23877_1040 (rho)
SSDB
Motif
Pfam: ATP-synt_ab Rho_RNA_bind AAA_25 DUF3086 Spore_III_AA AAA_22 AAA ATPase_2 NACHT
Other DBs
NCBI-ProteinID: AKZ54089
UniProt: A0A0K2AM72
Position
1028215..1029354
AA seq 379 aa
MTTTLQNPPSQHAPAEIASGVLDLDASGKGHLRGRSLQAEPADLTLSPALIRRHGLRKGD
LVEGVRGDRRTLSDVVRVGGRTPDRQAGRRHFHDLTPLHPHERLRLEHPAAGLTGRVADL
LAPVGKGQRGLIVAPPKTGKTVLLQQIAAAVAGNHPGSRLMVVLLDERPEEVTDMRRAVR
GEVYSSTFDRSAKQHIALADLVIERAKRLVEAGEDVVILLDSLTRLCRAHNNAASSGGRT
LSGGVDAGALLGPKRFFGAARAAEEGGSLTILATVLVETGSRADDFFFEELKGTGNMELR
LSRELADRRVFPAVDVTGSGTRREELLLSAPESHTVRGLRKVLVSREGHSGLETLLERMR
RTPDNATFLRHVQPTLPTG
NT seq 1140 nt   +upstreamnt  +downstreamnt
atgaccaccacactccagaaccccccttcccagcacgccccggccgagatcgcgagcggt
gtcctcgacctcgacgcgagcgggaagggacatctgcggggcaggagcctccaggccgag
ccggccgacctcaccctctcccccgccctgatccgccggcacggtctgcgcaagggcgac
ctggtggaaggcgtgcgcggcgaccggcgcaccctgtccgacgtcgtccgggtcggcggc
cgcacacccgaccggcaggccggccgacggcacttccacgacctgacaccactgcacccg
cacgagcgcctgcgcctcgaacacccggcggccggcctgaccggacgggtcgccgatctc
ctcgccccggtcggcaagggtcagcggggcctgatcgtggcaccgccgaagaccgggaag
accgtcctgctccagcagatcgccgccgcggtcgccggcaaccacccgggctcccgcctg
atggtggtgctgctcgacgaacggcccgaggaggtcaccgacatgcggcgggcggtgcgc
ggcgaggtgtactcctcgaccttcgaccggagcgccaagcagcacatcgcgctcgccgac
ctggtgatcgagcgggccaaacggctcgtcgaggccggcgaggacgtcgtcatcctcctc
gactccctcacccggctgtgcagggcgcacaacaacgccgcctcctccggcggccgcacc
ctcagcggtggtgtcgacgccggggcactcctcgggcccaagcggttcttcggcgccgcc
cgggcggccgaggagggcggctcgctcaccatcctggccaccgtcctggtggagaccggg
tcgcgggccgacgacttcttcttcgaggagctcaagggcaccggcaacatggagctccgg
ctgagccgggaactcgccgaccgccgggtcttcccggccgtcgacgtgaccggctccggc
acccgccgcgaggaactgctgctctcggcccccgagtcgcacaccgtgcgagggctgcga
aaggtcctggtgagccgggaggggcactccggcctggagacactgctggagcggatgcgc
cggacgccggacaacgccacgttcctgcgccacgtccagccgaccctgcccaccggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (18)   

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