KEGG   Sinocyclocheilus anshuiensis: 107662217
Entry
107662217         CDS       T04917                                 
Name
(RefSeq) LOW QUALITY PROTEIN: tRNA-splicing ligase RtcB homolog
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
sanh  Sinocyclocheilus anshuiensis
Brite
KEGG Orthology (KO) [BR:sanh00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:sanh03016]
    107662217
Enzymes [BR:sanh01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     107662217
Transfer RNA biogenesis [BR:sanh03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    107662217
 Prokaryotic type
   tRNA splicing ligases
    107662217
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-GeneID: 107662217
NCBI-ProteinID: XP_016307639
Position
Unknown
AA seq 498 aa
MSRTYNDELQYLDKIHKNCWRIKKGFVPNMQVEGVFYVNDPLEKLMFEELRNACRGGGEV
TAHTVFLVDNLCKQQCIFGKRIGIDKIHTIPNPINDVAAXRFVSSAGGVGFDINCAVRLL
RTNLDEGDVQPVKEQLAQSMFDHIPVGVGSKGVIPMGAKDLEEALEMGVDWSLREGYAWA
EDKEHCEEYGRMLQADPNKVSSKAKKRGLPQLGTLGAGNHYAEIQVVDEIYNDYAAKKMG
IDHKGQICVMIHSGSRGLGHQVATDALVAMEKAMKRDKITVNDRQLACARIMSPEGQDYL
KGMAAAGNYAWVNRSSMTFLTRQAFSKVFNTTPDDLDMHVIYDVSHNIAKVEEHMLDGKQ
KTLLLHRKGSTRAFPPHHPLIPVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMTETFGTTC
HGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTDVVNTCHD
AGISKKAIKLRPIAVIKG
NT seq 1497 nt   +upstreamnt  +downstreamnt
atgagtcgcacttataacgatgagcttcagtatctagataaaatccacaaaaactgctgg
cggatcaagaagggcttcgtgccgaacatgcaggtggagggtgttttctatgtgaatgat
cctctggagaaactcatgtttgaggagctgagaaacgcctgtcgtggtggaggtgaagtt
acagcacacacggtttttttagtggacaatttgtgcaaacaacaatgtatctttggaaaa
agaatcggaatcgataaaattcacacgatacccaaccctattaacgatgtggcggctnca
cggttcgtctcgtctgcaggtggcgtggggtttgacattaactgtgccgtccgtctgctg
aggactaacctggacgagggcgacgtgcagccggtgaaagagcagctggcgcagtccatg
tttgaccacattcccgtcggagtcggatccaagggcgtcattcccatgggagcaaaagat
ctggaggaagctctggagatgggtgtggactggtctctgagggaaggatacgcctgggct
gaggataaagagcactgtgaggaatacggccggatgctgcaagccgatcccaacaaagtc
tcgtccaaagccaagaagagaggactgccacagttggggacgctgggtgcaggaaaccac
tacgccgagattcaggtggtggatgagatctataacgattacgctgcgaagaagatgggc
atcgaccacaaggggcagatctgtgtgatgatccacagcggcagtcgaggcctcggccac
caggtggcgacagatgctttggttgcgatggagaaggcgatgaagcgggataagatcacg
gtgaacgaccgtcagctggcctgcgctcgcatcatgtctcctgagggtcaggactatctg
aagggcatggcggccgccggcaactacgcctgggtcaaccgctcctccatgaccttcctc
actcgacaggccttctccaaagtcttcaacaccacaccagacgatctggacatgcacgtc
atctacgacgtctcgcacaacatcgccaaggtggaagagcacatgctggatggcaaacag
aagacgcttctcctgcacaggaagggctcgacgcgagcgttcccgcctcaccatccactc
atacctgtcgactatcagctgacaggccagccggttctgatcggaggaaccatgggcacc
tgcagttacgtgttgacgggcacagagcagggcatgacggagacgtttggcaccacgtgt
cacggagcgggtcgagctctatccagagccaaatccagacgcaacttggacttccaggac
gttctggataaactggcagacatgggcatcgccatcagagtggcatcacccaagctggtg
atggaggaggctcctgaatcctacaagaacgtcacagatgtagtgaacacgtgccacgac
gccggcatcagtaagaaggccatcaagctcagacccatcgctgtgattaaaggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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