KEGG   Sinocyclocheilus anshuiensis: 107675693
Entry
107675693         CDS       T04917                                 
Name
(RefSeq) collagen alpha-1(XXVII) chain A
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
sanh  Sinocyclocheilus anshuiensis
Brite
KEGG Orthology (KO) [BR:sanh00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:sanh00536]
    107675693
Glycosaminoglycan binding proteins [BR:sanh00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   107675693
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3
Other DBs
NCBI-GeneID: 107675693
NCBI-ProteinID: XP_016325595
Position
Unknown
AA seq 1772 aa
MNLATRRRVRRTSRLVAKRALLLCILLYCTSFGFTQVLFEDVDVLQRLALRAELSSRAVP
AGVISLRSGVILTTRVRVTTATRSVFPPELFWNCTLVLSVRSHRLNSAFLFSVLSGKRIQ
LGLEISPGKLTLHAGPGNAAVFAYNLHDGRWHHLAFVLNGQSVTLHSPCSESDGRVTQKL
PILPERLNPRGTFRLGGTSALLPGVVPFEGAVCQFDVVPSAQAQQNYCSAIRRQCRENDT
YRPAPPALLPLPSKHAPPLLAHTLPPNRTFTFTPTNFLWTSINGAGGSSAVRMGNGVRPK
PTSTTPPPLSLMQTGLENPLSWGHLNSVTPKPTLRTPKSPKPTASKLGVVWLTPTKPARS
RPTPGKTSPKLSATKPSGPKPTIARPTSSKPGSSKTTGAKPTPPKPSKPAAVKPTVKKPT
LTPKPTNINPTKNTSTGAQPINPDKKHNAILKPLSNPEPTAPKRPSPTNKKPLQPKTSTQ
RSPQSTLPTPKSTAAPNPTPKKSLPTPKSAPFTTAAPNKPPKTLETPKVNPDKLKTPVHY
VTLGTPRFSVQSVTVPAFNDFQSFEAEPTYFSLLVGPPGQKGDPGKMGIPGPPGKPGQPG
LRGPRGPPGPHGKPGRPGPTGLKGKKGDPGLSPGKAPKGEKGDVGLSGPVGLVAPEGRKG
QKGHPGPPGLPGEPGEQGPDGEAGAKGYPGRQGLPGPIGPVGPKGARGFIGIPGLFGLPG
ADGERGSPGPPGKRGKMGRPGFPGDFGERGPPGLDGEPGVIGAPGPPGVHGLIGDMGPVG
IIGLPGPNGLKGVPGNMGEPGLKGDKGDVGLPGEQGEIGFSGDKGVQGLSGLPGPHGKPG
PQGKTGERGSSGLPGPPGLEGFPGDIGKPGLNGPEGPKGLMSSKGFPGAVGPEGVKGEQG
VTGKAGPMGERGLVGFIGPAGETGLAGEKGDRGEMGLPGPPGEKGSTGHPGTPGESGPPG
PPGSPGPSGSRGPIGMRGAKGRRGPRGPDGMPGDLGAEGKKGLDGPPGKIGFPGQAGKIG
EPGEAGPKGFPGIQGPSGATGDKGIAGEPGPPGPPGTLGPPGNPGPKGPAGKVGDPGLPG
EPGEKGSLGPVGNAGAAGLIGTRGEPGLEGEAGPAGPDGAKGEKGDMGGEGEQGVRGDPG
IKGKEGPPGDPGLTGVRGPEGKPGKNGERGKPGFKSAKGNIGHLGETGAMGKIGPIGTTG
PKGSRGTIGYVGSPGRMGMQGDPGISGYEGHKGPQGPVGPPGPKGEKGEQGDDGKVEGPT
GPPGLQGLVGKRGDRGEPGDPGYAGQQGVDGFRGKPGAPGLPGDPGPRGIQGPKGSKGEQ
GQKGKRGQQGERGSRGSPGVVGLPGPRGTVGREGQEGVPGMDGIPGKDGSRGIPGDQGDD
GEFGLPGKPGAPGKVGVIGLPGPQGSFGPKGERGLPGHTGPSGKRGFKGGMGLPGSQGDR
GPKGQSGDIGEPGFPGMLGMFGPKGPPGDFGLKGIQGPKGPQGSMGRGGLAGPVGVIGPI
GSPGPRGDTGSKGEMGVQGPRGAPGPRGRPGPPGPPRIPLALKQDFGLGLAQPVFMEMHT
QKIEGRGLMDMPMLDQAPEILRTLHYLSSLVHSLKNPLGTQDHPARLCKDLQGCRDTLYD
GTYWIDPNLGCSSDSIEVTCNFTGGGRTCLRPITTAKLEFSVGRVQMNFLQLLSAGAEQR
ITIHCLNVTIWSHAPSEPPSQNAVRFQAWTGETLEPDVLGDNCWQLNGRWQHADFLFRVS
DPALLPVVRISNLPKTTASSRFHVEVGPVCFL
NT seq 5319 nt   +upstreamnt  +downstreamnt
atgaatttagcgacccgaaggagagtccgcagaacctctcgtctggtggcaaagagagct
cttcttctgtgtattctactttactgtacttcttttggattcacccaagtactctttgaa
gatgtggacgtgttgcagcggttggctctgcgtgctgagctcagttctcgtgccgttccc
gctggcgtcatctccctccgctctggagtcatcctcacgacacgggtacgagttaccacg
gcgacacgttccgtgttcccaccagaactcttctggaactgcactctcgtcctgagcgtc
cgatctcaccgcttaaactcagcatttctcttctccgtcctatctgggaagcgaattcaa
ctcgggctggaaatttcgcccggcaagctaacacttcacgccggccctgggaatgctgcg
gtctttgcgtacaacctccatgacgggcgctggcatcatctagcctttgttttaaatggc
caatcagtgaccctacactctccctgctcggagagcgatggcagagttacacagaaactc
cccatacttcccgaacgcctgaaccctcgcgggaccttccgcttgggcggcaccagcgct
ttgcttccgggtgtggtaccgtttgagggagcggtttgccagtttgacgtggtgccctcg
gcacaagcacagcagaactactgcagcgccatccgcaggcagtgcagagaaaatgacacc
tacaggccagcgcctcccgctctacttcccctcccgtccaaacacgccccaccactattg
gcccacacgttaccacctaatcgcactttcactttcactcccactaatttcctttggaca
tccataaatggcgcaggagggtcttctgctgtgagaatgggcaacggtgtacgaccaaaa
cccacgtctaccacacctccacccctttccttgatgcaaacaggacttgaaaatccttta
tcatggggacatttaaattctgtcacccccaaacctactctcaggacacccaaaagcccc
aagccgactgcctcaaagcttggagtggtctggcttacccctacaaaaccagccagatcc
agacccactccaggaaaaacgtctccaaagcttagtgcaacaaagccttccggaccaaag
cccacaattgctcgacctacttcttccaaacctggaagttcaaaaacaactggtgccaaa
cctacgccaccgaaaccttccaaaccagcagctgtaaaacccacggtaaagaaaccaact
cttacgccaaagcccaccaatatcaacccaacaaagaatacttctactggtgctcaacct
atcaatcctgacaagaaacacaatgccattctaaaaccgttgtccaacccagaaccgacc
gcccccaaaagaccctcgccaaccaacaaaaagccactccagcccaaaaccagcacccaa
cgctcaccccaaagcacactcccaaccccaaaatctaccgccgccccaaaccctacaccc
aaaaaaagccttccgacgcccaaatctgctccgttcaccaccgctgcaccaaacaaacca
ccaaaaactctggaaacccccaaagtcaatcctgacaagctgaaaacacctgtgcattat
gtcacactgggcactccaaggttttccgtccaatctgtgactgttccggctttcaacgat
ttccagagcttcgaggcggagcccacatacttttcgcttctggttggaccgccgggacaa
aaaggagatcccgggaaaatgggaatcccgggacctccagggaaaccagggcagccaggg
ctgagaggacctcggggccccccaggaccacacggcaagccaggtcgacccggtccaaca
gggttgaaggggaagaaaggagaccctggactgtctcctggaaaagcaccaaaaggagaa
aaaggagacgttggtctgtctggtcctgttggtttagtcgcgccggaaggccggaaggga
caaaaaggccatccaggaccaccaggccttcccggggaaccaggggaacaaggtcctgat
ggagaagctggagccaaaggctatcctggcaggcagggtttacctggtccaatagggcct
gttgggccaaaaggggctcggggttttattggaatccctggactctttggtttacctgga
gctgatggtgaaagaggtagtcctggtccaccggggaagaggggcaagatgggtaggccg
ggttttcctggtgattttggagagaggggcccaccaggactggacggggagccaggtgtt
ataggggctcctggtcctcctggtgtccatggattgattggtgatatgggccctgtcggg
attatcggtttgccgggaccaaatggactgaaaggcgtcccagggaacatgggcgagccc
ggactgaaaggtgataagggtgatgttgggcttcctggagaacaaggggaaattgggttc
tcaggagacaagggtgtgcagggtttgtcaggcttacctggacctcatggaaaaccagga
ccacagggcaagacaggagaaagagggtccagtggattaccaggcccaccaggactcgag
ggtttccctggtgacatcggaaaacctggactcaatggacccgagggcccaaagggtctg
atgagcagtaaggggttccctggggctgttggacctgaaggggtcaaaggcgagcagggt
gtcacaggaaaggctggacccatgggtgagaggggtctcgttggcttcatcggccctgca
ggggagactggactagctggagagaagggtgatcgtggagagatgggattgcccgggcct
ccaggagagaaaggatctaccgggcacccaggaacccctggagagagcggcccaccagga
ccaccaggcagtccaggcccatcgggatcacgtggacccatcggcatgagaggagctaaa
ggaagacggggtcctagaggtccggacggtatgccaggcgatctcggtgctgaaggcaaa
aagggtcttgatggtcctccaggaaaaatcggtttcccgggacaagcgggcaagatcggg
gagcctggggaggcggggccaaagggatttccgggcattcaagggccatccggggctaca
ggagacaaaggaatcgcaggggagccaggacctccagggcccccaggaacactcgggcct
cctggaaatccagggccaaagggccctgcgggaaaagttggcgatcccggacttccagga
gaacctggagaaaaggggtcactcgggcctgtggggaacgctggggcagcaggactaatc
ggaacaaggggagaaccaggtttagagggagaggctggtccggctggccctgatggtgcc
aagggtgaaaagggcgacatgggcggagagggcgagcagggtgtcagaggtgacccggga
atcaaggggaaagaagggccaccgggcgaccctgggcttactggcgtcagaggtcctgaa
ggaaaacctggcaaaaatggcgagagagggaagccagggtttaagagtgccaaaggtaac
atcggccacctgggagagacaggagccatgggaaagatcggaccaatcggaaccaccgga
ccaaagggctctcgaggaaccatcggatatgtgggcagtcccgggcgtatggggatgcag
ggggatccgggcatatcaggatatgagggtcacaagggacctcaaggtccagtaggaccc
ccgggaccaaagggtgaaaagggtgaacagggggatgatgggaaggtggaaggtcctact
ggtcctccaggactccaaggtctagttggaaagcgaggagacaggggcgagccgggagat
ccaggatacgcgggtcagcaaggtgttgatggttttcgaggcaaacctggtgctcctgga
ctacctggtgatcctggtccacgtgggatacaaggccctaaaggatccaaaggagaacag
ggtcagaagggtaaacggggtcagcagggagagcgtggcagcagaggctcaccgggtgtt
gttgggttacccggcccaagaggcacagtgggtcgagaaggacaggagggcgttcctggc
atggatgggatcccagggaaagatggaagcagaggaataccaggcgatcagggagatgat
ggcgagtttggtttgcctggtaaacccggtgcacctggcaaagttggcgttatcggttta
ccaggcccacagggatcatttggtccaaagggtgagaggggccttcctggtcacaccggc
ccttcaggaaagagaggttttaaaggaggaatgggccttcctggatctcagggagaccgg
ggtcctaaaggccaatctggtgacatcggggaacccggctttccagggatgctgggaatg
tttggaccgaaggggcctccaggagactttggactgaagggcattcaggggcccaaaggg
ccgcagggcagcatgggtagagggggtttagctggacctgtcggtgtgattggccctatc
ggtagtccaggcccgagaggagacactggcagcaaaggagagatgggtgttcagggacct
cgaggtgctcctggaccgcgtggacgtcctggacctccgggtccaccgcgaatcccactg
gctttgaaacaggattttggtcttggattggcccagccagtttttatggagatgcacaca
cagaaaatagagggtcggggtctgatggacatgcccatgttggatcaggctccagagatc
ctgcggactctccattacctgagctctctggtccacagcctgaagaacccgctgggcaca
caagatcaccccgctcgactctgcaaagacctgcaaggctgccgggacacgctctacgat
ggcacttattggatcgacccaaacctgggctgctcctcagactctatagaagtgacgtgc
aatttcaccggcggcggacgcacctgcctcaggcccatcaccacagccaagctggagttc
agtgtcggacgcgttcagatgaacttcctgcagctgctgagcgccggagcggagcaacga
atcactatccactgcttgaacgtgacaatctggagccacgccccctctgagcctccgtcc
cagaatgcagttcggttccaggcgtggaccggagagacgctggagccggatgtgttagga
gacaactgctggcaactaaacgggcgctggcaacatgctgacttcctgttccgggtgtcg
gaccccgccttacttcctgtcgtacgcataagcaacctaccaaagacaacggcctcatcg
cgctttcacgtagaagtcggacctgtgtgcttcctttag

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