KEGG   Sinocyclocheilus anshuiensis: 107681148
Entry
107681148         CDS       T04917                                 
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11-like
  KO
K14400  pre-mRNA cleavage complex 2 protein Pcf11
Organism
sanh  Sinocyclocheilus anshuiensis
Pathway
sanh03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:sanh00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107681148
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sanh03021]
    107681148
   03019 Messenger RNA biogenesis [BR:sanh03019]
    107681148
Transcription machinery [BR:sanh03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     107681148
Messenger RNA biogenesis [BR:sanh03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Pre-mRNA cleavage factor IIm (CFIIm)
     107681148
SSDB
Motif
Pfam: PCF11_charged Pcf11_helical CID CFIA_Pcf11
Other DBs
NCBI-GeneID: 107681148
NCBI-ProteinID: XP_016332815
UniProt: A0A671RLC4
Position
Unknown
AA seq 1461 aa
MSDEGAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPPG
EKLPVLYLVDSIVKNVGGEYLEVFAKNLVNSFICVFEKVDEATRKSLFKLRSTWDEIFPL
KKLYALDVRVNSIDPAWPIKPLPPNVNASIHVNPKFLKPTEETSPKPPPPQPPAQSLKQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASPAISSNHHVGAPARFNISPKVTHT
VPAPQTKPWPPAPSEKMATRDPRLNRLGATVNAKDQVMHKKESPVIPGFPTTSEKRGQVS
AERQSKLEKLRIPKKDNSAVEEKPKSKSVSPSGKGILVRPRGMESEHSKTAEVNKKDPRL
HKQMHDRTDSKDEDVREKKRSSEKKDRDEGVKNLDHQKSSSTRAKLINGSLNKHERLETF
LKQEIKVNKANVRKRSRSISRSPPLHSPKRKERRSSPKRKTRSITPPPKSGKARISKHSH
NDDAFSQSSLRDERAKKNAPEPRRSKRPLDDRAADQKDGPHLRISPAEHKDTKDSKRWRS
GWEENKHPKQSDSDLSHGRLGNQRHKTWNTNQRPSTPRIPKQHRLSVDSNIQIPEALNSA
SKRDLLRKASKSHADGEITSDEFLNVAHQINQLFQYQEERQRSDSWDESCDEGVYQSKKK
QEGAMSDAELSYLEHKSKLRRTQLQRPVQIEGQSPLDVMFYQLQREMAEQYSESSGVHKM
SGDAIKPDREDPRRTNRPPSCTGSTFRNSPSPVNLDGTFGKSTGLPFERSSSPVEMDQQP
GDISPRFESPNSVHSGTGPDDGPINVEGLSMQDNFLELGRSGQNLDESPGNTPTHSSEGS
MAQVNPPRHDGPNISQRFDRYKSSQAPFDGPPSHMREPRLDGPPRPYVPPPRYEGSTGGF
DGSGGPVRFPGHRFDAPPRFERFPKAHERPVRFNNPPVSHRPVRYTEPHNRVRFDPQAPI
HYDHPMHQNRFVNPQRFDNLHMQHGPPGYEEPRFPARLMNYDEQQGAVRFDSPSGGMRFE
NPVQPEPLIFDAPPVMPRYDPQGPPRYCGPNIPNQLRPQEPTIYDQTQGQAPVINPAVPP
PNFNMAPMNTYGGPAQQFTMQQNVSQASNFSVTGPTSSDFQGSFRPAPFPGPGVGNVPQP
IMGAQPFMPPNQISFQPGSQFQQPEPEPLRQIDVNDLLSKLISTGIIKPAQTDSTTDSTS
ASQTLSVPEEEEEEEQEEDESVPDMTGFVLEDMKLRHDSIITKLYTGIQCYSCGMRFTAS
QTDVYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEERAKSQFFEKVH
EEVVQKTQEAAKEREFQSVKAAADVVHELCEICQEQFEMYWEEEEEEWHLKNAIRVDEKT
YHPSCYEDYKNTSSFVDCTPSPNKMLTENPLTAFIKQEQGDEVSCSSIKEEPSEDNTDAP
TVKEEVQVKLEGESQTSAIIF
NT seq 4386 nt   +upstreamnt  +downstreamnt
atgtcggacgaaggcgcgagggaggacgcatgccgcgagtatcagtcctcgctggaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagccgaagaaaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctcctggt
gagaagcttccagttttgtacttagtggattccatagtgaagaatgttggaggggaatac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gaggccactagaaaaagtctcttcaaattgcgttccacatgggatgaaattttccccttg
aagaaactatatgcactagatgtgcgtgtgaactcgatagatcctgcctggcctataaaa
ccattgccaccaaatgtgaatgccagcatacatgtcaacccaaaatttttaaaaccgact
gaagaaacatctccgaagcctcctccaccacaacctccagctcagagcctgaaacaagaa
caattgataaggcaacagttgcttgcaaagcaaaagcagttgttagaacttcagcaaaag
aagatagagcttgaacttgaacaaacgaaagctcagttggctgccagtcctgctatttct
tcaaaccaccatgtcggtgctcctgcacgtttcaatatctcaccaaaagtcactcacacg
gttcctgcaccacagaccaaaccttggcctccagcaccatcagaaaaaatggcaaccaga
gatcctagattaaacagacttggtgcaactgtaaatgcaaaggatcaagtgatgcataag
aaggagagtccggtcataccaggctttccgactacatcagaaaaaagaggacaagtctca
gctgaaagacagagtaagttggagaagttgaggattccaaaaaaggataactctgcagtt
gaggaaaagcctaaatccaagtcggtgtcaccatctggaaaaggcatccttgtcagaccc
agaggaatggagtctgagcattcaaaaactgctgaagtgaataagaaggacccaaggcta
cataagcagatgcatgacaggacagattcaaaggatgaagatgtccgagagaagaaaaga
agttcagagaagaaagatagggatgaaggtgttaaaaacttggatcatcagaagtccagc
agcaccagggccaagcttataaatggctctctaaacaagcatgaaagacttgagacattt
ctgaaacaagaaattaaagtgaacaaagcaaatgttagaaaaaggtctcggtcaatatcc
cgttcaccaccattgcattctcccaaaagaaaagagaggcgatcatctccaaagagaaaa
accaggagtattactccaccccccaagtctggaaaggctaggataagtaaacattcacat
aatgatgatgctttttcacagtcgagtcttagagatgaacgtgccaagaaaaatgcccca
gaaccaagacgatcaaaaaggccacttgatgatagagctgctgatcagaaagatggacca
catctgagaatttctcctgcagagcataaagacacaaaagatagcaagagatggaggagt
ggatgggaagagaataaacatcccaaacagtcagattcagatctctcacacggacgacta
ggcaaccagagacacaagacatggaacactaatcaaagaccgtccacacctcgtatacct
aaacagcatcgcttgagtgttgatagcaacatacaaataccagaagcacttaattctgca
agtaaacgggaccttttaagaaaggctagcaaaagtcatgctgatggtgaaataaccagt
gacgaattcctcaatgtagcccatcaaataaaccagctttttcagtatcaagaggaaaga
cagcggtctgactcttgggatgaatcgtgtgatgagggagtatatcaatcaaaaaagaaa
caagaaggagccatgtctgatgcagagctttcttatcttgagcataaatctaagttgaga
agaacacagcttcagcgtccagtgcaaatagagggccagtcacctttggatgtaatgttc
tatcagcttcaacgtgaaatggccgaacaatacagtgaaagctcaggagtgcataaaatg
tctggtgatgccataaagcctgaccgcgaagatcctagaagaaccaacaggcctccatca
tgtacaggttccacattcagaaattcaccaagtccagtcaacttagacgggacctttgga
aaatccacaggactgccatttgaacggtcatcatctccagttgaaatggatcaacaacca
ggagacatcagcccacgttttgaaagtcccaacagtgtgcactctggtacaggtccagat
gatggtcctataaatgtagagggtctttcaatgcaagataatttcttggaactgggaaga
agtggacaaaaccttgatgaatctcctgggaatacaccaacgcactcctcagaaggatct
atggcacaggtgaacccgccacggcatgatggaccaaatatttctcaacgatttgataga
tataagagttctcaagctccctttgatgggccacctagccacatgagagagccacggtta
gatggtcctccaagaccttatgttcctcctcctcggtatgaaggcagtacagggggattt
gatgggtctggtggacccgtaaggtttcctggacatcgctttgatgcccctccccggttt
gaaagatttcccaaagcccatgaaagacctgtgagatttaacaacccaccagtatcacac
aggccagtgaggtacacagagcctcacaacagggtgagatttgaccctcaagccccaatt
cattatgaccacccaatgcaccaaaacagatttgttaatccacaaaggttcgataatctt
cacatgcaacacggtcctccaggatacgaggaaccacggttcccggctagactaatgaat
tatgatgaacagcagggtgcagttagatttgatagtccatcaggtgggatgcgctttgag
aacccggtgcagcctgaacccttaatatttgatgcaccgcctgtcatgccaagatatgac
ccacaaggtcctccaagatactgcggtccaaatattccaaaccagctgagaccacaggag
ccaacaatatatgatcaaactcaaggtcaagctcctgtgataaaccctgctgttccacct
cctaatttcaacatggcacccatgaacacgtatggtggcccagcccaacagtttaccatg
cagcaaaatgtttctcaagcatctaacttcagtgtgacaggccctacatcatcggatttc
caaggttcatttagacctgctccattccctggtccaggtgttggaaatgttcctcagcct
attatgggagctcaacccttcatgccaccaaaccaaatatctttccagcctggttcccag
tttcagcagcctgagcccgagccattgaggcaaatagatgtgaacgatctgttgtcaaaa
cttatatccactggaataataaaacctgcacaaacagactcaacgactgactctacttca
gcaagtcagactttatctgtgcctgaagaggaagaggaggaggaacaagaggaagatgaa
agtgtcccagatatgactggctttgttttggaggacatgaaactgagacacgacagcatt
atcaccaaactctatacaggaatccagtgctattcctgtggcatgcgttttactgcatct
cagacagatgtgtatgcggatcatttggactggcactacaggcagaatcgttcagagaag
gacatcagtaagaaagttacacaccgtcggtggtactacagtctgacggattggattgaa
tttgaggaaattgctgatcttgaggagagggcaaagagtcagttctttgaaaaagttcat
gaagaggttgtacagaaaactcaggaagcagccaaagagagagagttccagagcgtaaag
gctgcagcagatgtcgttcacgagctgtgtgagatttgccaggagcagtttgagatgtac
tgggaggaggaagaggaagagtggcatctgaagaatgccatcagagtcgatgaaaagaca
tatcatccctcatgttacgaagactacaaaaatacatcctcctttgtggactgcacaccc
tcacccaataaaatgcttacagaaaaccctttaacagctttcataaaacaagagcagggt
gatgaggtgtcatgctccagtattaaagaagagccctccgaggacaatacagatgcacca
acggtaaaagaggaggttcaggttaagttagaaggagaatcacaaaccagtgcaattatt
ttctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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