KEGG T04917: 107698636

Sinocyclocheilus anshuiensis: 107698636

Entry

107698636         CDS       T04917

Name

(RefSeq) cleavage and polyadenylation specificity factor subunit 1-like

K14401

cleavage and polyadenylation specificity factor subunit 1

Organism

sanh Sinocyclocheilus anshuiensis

Pathway

sanh03015

mRNA surveillance pathway

Brite

KEGG Orthology (KO) [BR:sanh00001]
09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107698636
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sanh03021]
    107698636
   03019 Messenger RNA biogenesis [BR:sanh03019]
    107698636
Transcription machinery [BR:sanh03021]
Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     107698636
Messenger RNA biogenesis [BR:sanh03019]
Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     107698636

SSDB

Motif

Pfam:

CPSF_A MMS1_N PHTB1_N

Other DBs

NCBI-GeneID:

107698636

NCBI-ProteinID:

XP_016355179

Position

Unknown

AA seq 1390 aa
MYAVYRQAHPPTAVEFAVYCNFISSQEKNLVVAATSQLYVYRIIYDVESTSKSEKSSDGK
SRKEKLEQVASFSLFGNVMSMASVQLAGTNRDALLLSFKDAKLSVVEYDPGTHDLKTLSL
HYFEEPELREGFVQNVHIPMVRVDPENRCAVMLVYGTCLVVLPFRKDTLTDEQEGIVGEG
QKSSFLPSYIIDVRELDEKLLNIIDMKFLHGYYEPTLLILFEPNQTWPGRVAVRQDTCSI
VAISLNIMQKVHPVIWSLSNLPFDCTQAMAVPKPIGGVVVFAVNSLLYLNQSVPPFGVSL
NSQTSGTTAFPLRPQEEVKITLDCSQASFITSDKMVISLKGGEIYVLTLITDGMRSVRAF
HFDKAAASVLSTCMTTMEAGYLFLGSRLGNSLLLRYTEKLQETPMEEGRENEEKEKQEEP
PNKKKRVDSVANWFQTNPEPDLEVVVCSGFGKNGALSVLQKSIRPQVVTTFELPGCHDMW
TVIYCEEKPEKSPPEGDSEGPEEEKQEQTVEDDKNKHGFLILSREDSTMILQTGQEIMEL
DTSGFATQGPTVYAGNIGDNKYIIQVSPVGIRLLEGVTQLHFIPVDLGSPIVHCSVADPY
VVIMTAEGVVTMFVLKSESYMGKSHRLALQKPQIHTQSRVITLCAYRDVSGMFTTENKVS
FLAKEETSIRTQSESESIIQDIGNALDDEEEMLYGESNPLSSPSKEEPSRVSAALSSTQT
GRQGRQEPSHWCLLVRENGVMEIYQLPDWRLVFLVKNFPVGQRVLVDSSASQLATQGKLK
KEEVMRQGEIPLVKEVALVSLGYNHSRPYLLAHVDQELLIYEAFPYDQQQAQSNLKVRFK
KMPHNINFREKKSKMRKDKKPEGQGEETVGVRGRVARFRYFQDISGYSGVFICGPSPHWM
LVTSRGAMRLHPMTIDGAIESFSPFHNINCPKGFLYFNKQGELRISVLPTYLSYDAPWPV
RKIPLRCTIHYVSYHVESKVYAVCSSVKEQCTRIPRMTGEEKEFETIERDERYIHPQQES
FSIQLISPVSWEAIPNTRIDLEEWEHVTCMKTVALKSQETVSGLKGYVALGTCLMQGEEV
TCRGRILILDVIEVVPEPGQPLTKNKFKVLYEKEQKGPVTALCHCSGYLVSAIGQKIFLW
SLKDNDLTGMAFIDTQLYIHQMHSIKNFILAADVMKSISLLRYQEESKTLSLISRDAKPL
EVYSVEFMVDNNQLGFLVSDRDKNLSVYMYLPEAKESFGGMRLLRRADFNAGAHVNAFWR
MPCRGTLDPASKKALTWDNKHITWFATLDGGVGLLLPMQEKTYRRLLMLQNALTTMLPHH
AGLNPKAFRMLHCDRRTLQNAVRNILDGELLNKYLYLSTMERSELAKKIGTTADIILDDL
LEVERVTAHF

NT seq 4173 nt +upstreamnt +downstreamnt
atgtacgcggtgtaccgtcaggctcatccgcccactgctgtggagttcgccgtgtactgc
aacttcatctccagccaagagaagaacctggtggtggcagcaacctctcagctgtatgtc
tacaggatcatctatgatgtggagagcacttccaaatcagaaaagtcatcagatggcaag
agccgtaaagagaagctggagcaggtggcgtccttctctctctttggaaatgtgatgtcc
atggccagcgttcagctcgcgggcaccaacagagacgccttgctcctcagcttcaaagat
gccaagctctcagttgtggagtatgatccaggcacgcatgatctcaagacgctgtcgctg
cactatttcgaggagccggagctgagagaagggtttgttcagaatgtgcacatccccatg
gtgcgtgtggacccagagaaccgctgcgctgtcatgctggtgtacggcacgtgtctggtg
gttctgcccttcaggaaggacacgctgaccgatgaacaagaaggcattgtgggagaaggg
cagaaatctagtttcctccccagttacatcattgatgttcgtgaactggatgagaagctc
ctaaacatcattgatatgaagtttctccacggttactatgaacccacactgcttattctg
tttgagcccaatcagacgtggccagggcgtgtggcagtgcgtcaggacacgtgcagtatc
gtggccatctctctaaacatcatgcagaaggttcatcccgtcatctggtctctcagtaac
ctgcccttcgactgcactcaggccatggctgtgcccaaacccatcggtggagttgtggtg
ttcgctgtgaattcattgctgtatctaaaccagagcgttcctccgttcggagtgtcactc
aacagtcagaccagcggcaccacagctttccccttgaggccacaggaggaagtgaagatc
acgctggactgttctcaagcatccttcatcacttcagataagatggtcatctcactaaaa
ggaggagaaatctacgtgttgacgctcatcacagatggcatgaggagcgtgcgggcgttt
cacttcgataaggctgctgccagcgtcctgagcacctgtatgacgaccatggaggccggt
tatctgttcttgggctctcgtctgggcaactcactgctgctcaggtacactgagaaactc
caggaaacaccaatggaagagggcagagagaacgaggagaaagagaaacaggaggagcct
ccgaataagaaaaagcgagtggattccgtggctaactggtttcagactaacccagagccg
gatctggaggtggtggtgtgctcgggattcggcaagaacggagctctctctgtactgcag
aaaagcatcagaccgcaggtggtcacaacgtttgaacttcctggatgccatgacatgtgg
acagtcatttactgtgaggagaaacctgagaagtctccaccagagggcgatagtgagggt
cctgaggaggagaagcaggagcaaacagtggaggatgacaagaacaaacacggcttcctc
atcctcagcagagaggactccactatgatcctgcagacaggtcaggagattatggagctg
gacaccagtggtttcgccacgcagggtcccactgtgtatgcgggcaacatcggagacaat
aaatacatcatccaggtgtctcctgtgggcatcagactgctagagggagtgacgcagctc
cactttatccctgtggacctgggctctcccatagtgcactgctctgtggccgatccctac
gtggtcatcatgacagcagagggagtggtcaccatgtttgtgctaaagagtgaatcgtac
atggggaagagccaccgcctggcactgcagaaaccacagatccacacgcaatcccgtgtg
attacgttatgtgcgtaccgtgacgtcagtggcatgttcaccactgagaacaaggtcagc
ttcctggccaaagaggaaacgtccatcagaacccagtcagagtcagagagcatcatccag
gacataggtaatgcgttggatgatgaggaggagatgctgtatggggagtcgaatcctctg
agcagccccagtaaagaggagcccagccgcgtctctgcagcactgagctccactcagaca
ggaagacagggcagacaggagccgtcacactggtgcctgctggtcagagagaacggagtc
atggagatctaccagcttcctgactggcgcctggttttcctggtgaaaaacttccctgtt
ggtcagcgtgttttggtcgacagctctgctagccagttggctactcaaggcaagctcaaa
aaggaggaagtgatgaggcagggagaaatcccattggtcaaagaagttgctctcgtgtct
ttaggctacaaccacagccgtccttacctgctggcacatgttgatcaagagcttctcatc
tatgaggcctttccatacgaccagcagcaggctcagagcaacctgaaagtgcgcttcaag
aagatgcctcataacattaacttcagagagaagaagtccaaaatgaggaaggacaagaag
cccgagggtcagggagaggagactgtgggggtcaggggtcgagtggccagattcagatac
ttccaggacatctcaggatactcaggggtgtttatctgcgggccgtctcctcactggatg
ctggtgacgtctcgaggggcgatgcggctccaccccatgactatagacggcgccatcgag
tccttctctccctttcacaatatcaactgccctaaaggattcctctacttcaacaaacag
ggcgagctgaggatcagtgtgttacccacatatctctcatacgacgctccctggcctgtc
cgcaagatcccactcaggtgtaccatccactatgtgtcgtaccatgtggaatccaaggtg
tatgcggtgtgcagcagtgttaaagagcagtgcacacgcatccccagaatgaccggcgag
gagaaggagtttgagaccatcgagagagatgagcggtacatacaccctcagcaggagagc
ttctccatccagctcatctctccggtcagctgggaggccatcccaaacacacgcattgat
ctggaggagtgggagcatgtgacatgtatgaagacagtggctctgaagagtcaggagact
gtgtcagggctgaagggatatgtggctttgggcacgtgcctcatgcagggagaggaggtc
acctgtaggggcagaatcctgattctggatgtgattgaggtggtgccagagcccggtcag
cccctcactaagaacaagtttaaagtgctgtatgagaaggagcagaaggggcccgtcacg
gctctctgtcactgcagtggatacctggtgtctgccatcggacagaagatcttcttgtgg
agtctgaaggataatgatctgaccggcatggccttcatcgacacacagctctacatccat
cagatgcacagcatcaagaacttcatcctcgccgctgatgtgatgaagagcatctctctg
ctgcgctaccaggaagagagcaagacgctctcgctcatcagcagggatgcaaagcccttg
gaggtttacagcgtagagtttatggtggacaacaaccagcttggcttcctggtttcagac
cgagacaaaaacctgtccgtctacatgtacctgccagaagccaaagagagtttcggaggc
atgcgtttgctgcggagagccgattttaacgctggtgctcatgtgaacgccttctggagg
atgccgtgccgcggcactctggaccccgccagcaagaaggcgctcacctgggacaacaaa
cacatcacgtggttcgctacgctggacggtggcgtcggcctgcttctgcccatgcaggag
aagacgtaccgcagactgctgatgctgcagaacgccctcaccaccatgctgccgcatcac
gcggggctcaacccaaaggccttcaggatgctgcactgtgaccggcggacgctgcagaac
gcggtgaggaacatcctggatggagagctgctgaacaagtacctgtacctcagcaccatg
gagcgaagtgaactggccaagaagatcggcacaaccgcagacattatcttggatgatctt
ctggaggttgagagagtaactgctcacttctga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (14)   

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