KEGG   Spiroplasma apis: SAPIS_v1c00440
Entry
SAPIS_v1c00440    CDS       T02945                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sapi  Spiroplasma apis
Pathway
sapi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sapi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    SAPIS_v1c00440 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sapi03021]
    SAPIS_v1c00440 (rpoC)
   03400 DNA repair and recombination proteins [BR:sapi03400]
    SAPIS_v1c00440 (rpoC)
Enzymes [BR:sapi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     SAPIS_v1c00440 (rpoC)
Transcription machinery [BR:sapi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     SAPIS_v1c00440 (rpoC)
DNA repair and recombination proteins [BR:sapi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      SAPIS_v1c00440 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23
Other DBs
NCBI-ProteinID: AHB35891
UniProt: V5RIF4
Position
42779..46543
AA seq 1254 aa
MGNPNKRMIKIELASPDVIRSWSRGEVTKPETINYKTLKTEKEGLFDERIFGPTKNYECS
CGKYKKVKNKGKVCERCGVEITESIVRRERMGHIELEEPVTHIWMLKVAPSRIASILDLK
TKEVEEVVYFVSHIVLDPGNSRHLKRGQVLDLGNAKASLKTREKLLKTLEDIKVNLEPES
LQWKRAEILIQQLKSPQTPFSMDEAASFISRNIQAKFGIGASAIEELLSNIDLSKEIAKI
KEDLKERKGSTEQNKLMKRLEVLDSLQKSQSRPEWMILHVIPVIPPDIRPIIQLDGGRFT
TSEINDLYRRIIIRNERLKKVKTMGAPSIIVNNEKRMLQEAVDALLDNERKPRPVTGKDK
RALKSLTSILKGKQGRFRQNLLGKRVDYSGRSVIAIGPDLKMYQAGIPRDMAITLFKPFV
IRRLQENELAENVKVAEKMIAANDSKVWDVLEEVIKDRPVLLNRAPTLHRLGIQAFEPKL
VKGKAIRLHPLVTTAFNADFDGDQMAVHLPISDEAVAEARALMLGSKAILGPKDGKPIVT
PTQDMILGNYYITTEEKSNETNQVKGEATIFSSCEEVHIAYETDTVSLNAIVAIPVSELK
NKMFSQEDQDKYLITTVGKIIFNQMFNEEFPWIVNNNILNAEEEIKKFLLPSDIDLRKYI
QEEYVIQQPIKKKELSLIIERYFKAYGAQKTAQMLDNMKDLGFKYSSKSGTTISAADVVA
YTEKFEDFKIADEKVAQITEFYNLGMLTKTEKKRRVINVWSQVKDKIQTKLEDVLKKDTK
NPIFVMADSGARGNVSNFTQLVGMRGLMNDPKGDIKEIPIKSSFREGLTVSEYFISTHGA
RKGMADVALKTADSGYLTRRLVDISQEIIVTEEDCGTSKGFNVHSIVETKHDNIIVPLKD
RLVGRYIFETIRDHTGKIIVETNDLVTIDIADEIIKAGVEEVNIRTVLTCDTNRGVCQKC
YGINLATGDPVSIGEPVGVVAAQSIGEPGTQLTMRTFHTGGVAGGADITQGLPRIKELLD
VTTPKGSIAIISQIDGVVKEAKEEDGILSITVTSDQDERKYKSQYGAITRVKEGDEVTRG
QKLTEGAINIKELLEVARIEDVQNYILKEVQKVYRLQGIEISDKYIEIIVKQMLNKVKII
DSGDTPLLPGEIISSRNYRTEVLKAIEAGQKPPLAKHVIFGIKKAPLESDSWLSSASFQD
TARVLVKAVIKGKVDKLEGLKENIMLGNLIPAGTGLTGSADIIQRGKDTYDSEY
NT seq 3765 nt   +upstreamnt  +downstreamnt
atgggaaacccaaataaaagaatgataaaaatagagcttgcttctcctgatgtgattaga
tcttgatcacgtggtgaagtaacaaaaccagaaacaataaattataagacactgaaaacc
gaaaaagaaggtctatttgatgaaagaatctttggaccaactaaaaactacgaatgtagt
tgcggtaaatataaaaaagttaaaaataagggaaaagtttgtgaacgttgtggagttgaa
attactgagtcaatagtaagacgtgaacgaatgggacatatcgaattagaagaaccagtt
acacatatatgaatgcttaaagtagctccttcaagaatcgcttcaattttagatttaaaa
acaaaagaagttgaagaagtagtatactttgtaagtcatattgttcttgatcctggtaac
tcacgtcacctaaaaagaggacaagtactagatcttggtaatgcaaaagcaagtttaaaa
actagagagaagctcttgaaaacattggaagacatcaaggtaaaccttgaaccagaatca
ttacaatgaaaaagagcggaaatcttaatacaacaacttaaatctccgcaaacaccattc
tcaatggatgaggcagcttcattcatttcaagaaatattcaagctaagtttggtattgga
gcaagtgcaattgaagaacttctaagtaatatagatctttctaaagaaatagctaagatt
aaagaagatttaaaagaacgtaaaggttcaaccgaacaaaataaacttatgaaacgtctt
gaagttttagattcactacaaaaatcacaatcaagacctgagtgaatgatattacatgta
atacctgtaatcccaccagatattagaccaataatccaattagatggaggaaggtttaca
acatctgaaataaacgacttatacagaagaataataatcagaaatgaacgtcttaaaaaa
gttaaaacaatgggtgcaccaagtataattgttaataatgaaaaacgtatgctacaagaa
gctgttgatgcattattagataacgaacgtaagccaagacctgtaaccggaaaagacaaa
cgtgctttaaaatctttaacatcaattcttaaaggtaaacaaggacgtttccgtcaaaac
cttttaggaaaacgtgttgactactcagggagatcagttattgctattggtccagattta
aaaatgtatcaagcaggaattcctcgtgatatggctatcacattgttcaagccatttgtt
ataagaagactacaagaaaatgagttagctgagaatgtaaaagtagcggaaaaaatgatc
gctgcaaatgattctaaagtttgagacgtacttgaggaagttataaaagatagaccagta
ttgttaaaccgtgcaccgactcttcaccgtttaggtattcaagcatttgaacctaaacta
gtaaaagggaaagctattcgtttacaccctctagtaacaactgcatttaacgccgacttt
gatggtgaccaaatggcagtccatttaccaattagtgatgaagcggttgctgaggcaaga
gctcttatgcttggaagtaaggcaattttgggtcctaaagacggaaaaccaattgtaact
ccaacacaagatatgattcttggaaactattacattacaactgaagaaaaaagtaatgaa
acaaatcaagtaaaaggagaagcaactatattctcttcttgcgaagaagttcatatagca
tacgaaactgatacagtctctctaaatgctatcgttgcaataccagttagtgaacttaaa
aataaaatgtttagtcaagaagaccaagacaaatatctaataaccacagtcggaaaaatt
attttcaatcaaatgttcaatgaagaattcccttgaattgttaataacaatatattgaat
gctgaagaagaaattaaaaaattcttattaccttccgatattgatttacgtaaatatatt
caagaagaatatgtaatacaacaaccaatcaagaaaaaagaactctcattaattattgaa
agatactttaaagcatatggagcacaaaaaactgcacaaatgttagataatatgaaggac
ttaggattcaaatactcttctaagtctggaactacaattagtgcagccgatgttgttgct
tatactgaaaagtttgaagatttcaaaattgcggatgaaaaagttgcacaaattacagag
ttttacaaccttggtatgttaactaagaccgagaaaaaacgtcgtgtcataaatgtatga
tcacaagtaaaagataaaattcaaacaaaactagaagatgttcttaaaaaggatacaaaa
aacccaatctttgtgatggctgattctggtgcccgtggtaatgtttctaacttcacacaa
cttgtaggtatgaggggacttatgaatgaccctaagggtgatattaaagaaattccgatt
aaatcttcttttagagaaggtctaaccgtttctgaatactttatttcaacccacggtgcg
agaaaaggtatggccgatgtggctcttaaaacagctgactctggttatttaacaagaaga
cttgtagacatatcacaagaaatcattgtaaccgaagaggactgtggtacaagcaaagga
tttaatgttcattcaattgttgaaacaaaacatgataacataattgttcctttgaaagac
cgacttgttggtagatatattttcgaaacaattagagatcatactggtaaaatcattgtt
gaaacaaatgatttagtaacaattgacatagctgacgaaataattaaggccggtgttgag
gaagtaaacattaggactgtcttgacttgtgataccaatagaggtgtttgtcaaaagtgt
tacggtatcaacttagcaactggtgatcctgtttcaattggtgaaccagttggtgtagtt
gccgctcaatcaattggtgaacccggaacacaacttacaatgcgtacattccatactggt
ggtgttgctggtggagccgatattacccaagggctaccacgtattaaagagttactcgat
gttacaacaccaaaaggttcaattgcaatcatatctcaaatagatggtgtggttaaagaa
gcgaaagaagaagatggaatattgtctataacagttacttcagaccaagatgagagaaaa
tataaatctcaatatggtgcaattacgcgtgttaaagaaggtgacgaagttacaagggga
caaaaacttaccgaaggtgcaataaatattaaagaattgcttgaggtagctagaattgaa
gatgttcaaaattacatattaaaagaagttcaaaaagtttaccgtttacaaggtattgaa
atttctgataaatatatagaaataattgttaaacaaatgttaaacaaagtaaaaataatt
gattctggagatactccacttcttccaggagaaattatatcttcacgaaattatcgaaca
gaggttttaaaagctattgaagctggacaaaaacctccattagcaaaacacgtaatattt
ggaattaaaaaagcaccacttgagtctgattcttgattatcaagtgcgtcattccaagat
acagcccgtgttcttgttaaagcagttatcaagggtaaagttgataaacttgagggttta
aaagaaaacattatgttaggaaacttaatccctgctggaactggattaacaggatcagct
gatattattcaaagaggtaaagacacttacgactcagaatattaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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