KEGG   Scedosporium apiospermum: SAPIO_CDS5153
Entry
SAPIO_CDS5153     CDS       T06367                                 
Name
(RefSeq) TFIIH basal transcription factor complex p47 subunit
  KO
K03142  transcription initiation factor TFIIH subunit 2
Organism
sapo  Scedosporium apiospermum
Pathway
sapo03022  Basal transcription factors
sapo03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sapo00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    SAPIO_CDS5153
  09124 Replication and repair
   03420 Nucleotide excision repair
    SAPIO_CDS5153
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sapo03021]
    SAPIO_CDS5153
   03400 DNA repair and recombination proteins [BR:sapo03400]
    SAPIO_CDS5153
Transcription machinery [BR:sapo03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     SAPIO_CDS5153
DNA repair and recombination proteins [BR:sapo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     SAPIO_CDS5153
SSDB
Motif
Pfam: Ssl1 C1_4 VWA_2 VWA Tnp_zf-ribbon_2 DUF4796
Other DBs
NCBI-GeneID: 27724225
NCBI-ProteinID: XP_016642869
UniProt: A0A084G6V8
Position
Unknown
AA seq 471 aa
MSDSDGEYVADDMSDDFMDHQVTSTTEARDASRSRRRDKKSHQKGGRKAAWEDVKRSWDT
VVEGQDGSLSIAEVIEAQKRKRLLRDTTPLERGIIRHLMLVIDMSFAMAEKDLLPTRYRL
TMTFAAEFVKEYFEQNPISQMGIIGMKDGVAVSVSEMSGNPTSHLEKVARWRDEEPKGNP
SYQNALEMCRGALFNTPSHGTREVLIVSGAILSSDPGDINETIASLIQNNIRVSIIGLAA
QVSICEEICRRTNAGDTTQYNVAMDEKHFRELFLDKTTPPVTRTEEQNAASLLMMGFPSR
TLASGTGINYCACHNKPLREGYRCTRCGTKVCRIPADCPGCGLTLILSTHLARSYHHLLP
LRNFVEVPWSEAARSTACFACQAPFPEPPKKGPSTEPPAPKPPEVKGVSESSRYACKNCH
SHFCVDCDVFCHETVHNCPGCEAGLRKPRARPVETNGNSTNGHTNGAMIID
NT seq 1416 nt   +upstreamnt  +downstreamnt
atgtcagattccgatggcgagtacgtcgccgacgacatgtcggacgacttcatggaccac
caagtaacgagcacaaccgaagccagagacgcctccaggagtcgtcggcgcgacaaaaaa
agccaccaaaaaggcggacgcaaagcggcgtgggaagacgtcaagagaagctgggacacc
gtggtcgagggccaggacggcagcctatcgatagcggaagtgatcgaggcgcagaagcgc
aagaggttattacgggacacgacgcccctcgaaaggggaatcatacggcacctgatgctc
gtcatcgacatgtcgttcgccatggccgagaaggatctcctgccgacgaggtaccgactt
acgatgacgtttgcggccgagttcgtcaaggagtattttgagcagaatccgatttcgcag
atggggatcattgggatgaaggatggcgtggcggttagcgtgagtgagatgagtgggaat
ccgacgagtcatttggagaaggtggcgaggtggagggatgaggagccgaagggtaatcca
agctaccagaatgccttggagatgtgtcgcggtgcactattcaatacgccttcccatggc
acacgagaagtcctaatcgtctctggcgccatcctctccagtgaccccggcgacatcaac
gaaacgatagcaagcctcatccaaaacaacatccgcgtctccataatcggcctagccgcg
caagtatccatctgcgaagagatatgccgacggacaaacgccggcgacacgacgcaatac
aacgtcgccatggacgagaagcacttccgcgagctcttcctcgacaaaaccacaccgccg
gtaacccgcaccgaggagcagaacgccgcgagcctcctcatgatggggtttccctcgcgc
acgctcgcctcggggacgggtatcaactactgcgcctgccataataaacccctcagggaa
ggttaccggtgtacacgctgcggcacaaaagtctgccgcatacccgccgactgtcctggc
tgcgggctcacactcatcctctcgacgcatctcgccagatcctaccaccacctgttaccc
ctccgcaacttcgtcgaagtcccctggtcggaagccgcgaggtccacggcgtgcttcgcc
tgccaagcgccgttccccgaaccccctaagaagggcccttctactgagccgccagccccg
aaacctcctgaggtcaagggcgtaagcgagagcagcagatatgcttgcaagaactgccac
tcccacttttgcgtcgactgcgacgtcttttgccacgagacggtgcataattgccccggc
tgcgaagccggtctccgaaaacctagggctcggccggtggagactaacggaaactctacg
aatgggcacacgaacggtgcgatgatcattgattaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (18)   

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