KEGG   Salmo salar (Atlantic salmon): 100136424
Entry
100136424         CDS       T04363                                 
Symbol
rbx1, hop21
Name
(RefSeq) ring-box 1
  KO
K03868  E3 ubiquitin-protein ligase RBX1 [EC:2.3.2.32]
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03420  Nucleotide excision repair
sasa04110  Cell cycle
sasa04114  Oocyte meiosis
sasa04120  Ubiquitin mediated proteolysis
sasa04141  Protein processing in endoplasmic reticulum
sasa04310  Wnt signaling pathway
sasa04350  TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    100136424 (rbx1)
   04120 Ubiquitin mediated proteolysis
    100136424 (rbx1)
  09124 Replication and repair
   03420 Nucleotide excision repair
    100136424 (rbx1)
 09130 Environmental Information Processing
  09132 Signal transduction
   04310 Wnt signaling pathway
    100136424 (rbx1)
   04350 TGF-beta signaling pathway
    100136424 (rbx1)
 09140 Cellular Processes
  09143 Cell growth and death
   04110 Cell cycle
    100136424 (rbx1)
   04114 Oocyte meiosis
    100136424 (rbx1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:sasa04121]
    100136424 (rbx1)
   03400 DNA repair and recombination proteins [BR:sasa03400]
    100136424 (rbx1)
Enzymes [BR:sasa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.32  cullin-RING-type E3 NEDD8 transferase
     100136424 (rbx1)
Ubiquitin system [BR:sasa04121]
 Ubiquitin ligases (E3)
  UBL E3 ligases
   100136424 (rbx1)
  Multi subunit Ring-finger type E3
   SCF complex
    Ring finger protein
     100136424 (rbx1)
   Cul2 complex
     100136424 (rbx1)
   Cul3 complex
     100136424 (rbx1)
   Cul4 complex
     100136424 (rbx1)
   Cul7 complex
     100136424 (rbx1)
   Cul8 complex
     100136424 (rbx1)
   Cul9 complex
     100136424 (rbx1)
DNA repair and recombination proteins [BR:sasa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      100136424 (rbx1)
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      100136424 (rbx1)
SSDB
Motif
Pfam: zf-rbx1 zf-ANAPC11 zf-RING_2 zf-C3HC4 zf-C3HC4_2 zf-RING_11
Other DBs
NCBI-GeneID: 100136424
NCBI-ProteinID: NP_001117036
UniProt: Q52JL4 B5X694
Position
ssa06:complement(33562734..33566663), ssa24:complement(19237475..19240724)
AA seq 189 aa
MSEGVPSPVCPSGTLAQAHQSPHRLPMEGQAAQAAGSTNVCWLRLKASADHLIHVALRIL
CNVMHSHIVHLVPNSARAIVNMAAAMDVDTPSATNSGASKKRFEVKKWNAVALWAWDIVV
DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNR
EWEFQKYGH
NT seq 570 nt   +upstreamnt  +downstreamnt
atgtctgaaggtgtccccagtcctgtctgcccgtctggcaccctggctcaggctcaccaa
agcccccaccgcctccctatggaaggtcaagcggcccaggcagcggggtccacaaacgtg
tgctggctcaggctcaaggcttctgctgaccatcttatacatgtagctcttcgtatcctc
tgtaatgtaatgcatagccacatagtacacctcgtgccgaattcggcacgagcgatagtc
aacatggcggcagcgatggatgttgataccccaagcgccacgaatagtggagcaagcaag
aaacgttttgaagtgaagaagtggaatgcagtggcactttgggcctgggacattgtggtg
gacaactgtgccatctgtaggaatcacattatggatctctgcatagagtgccaggctaac
caggcctctgccacatcagaggagtgcaccgtagcctggggagtctgcaatcatgcattc
catttccactgtatctcccgttggttgaagaccaggcaggtgtgccccctagacaacagg
gagtgggagtttcagaaatatggacactag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (7)   
   KEGG PATHWAY (7)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (383)   
   KEGG ORTHOLOGY (1)   
   RefGene (379)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (2)   
   RefSeq(pep) (2)   
DNA sequence (14)   
   RefSeq(nuc) (2)   
   GenBank (6)   
   EMBL (6)   
Protein domain (6)   
   Pfam (6)   
All databases (420)   

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