KEGG   Salmo salar (Atlantic salmon): 100195234
Entry
100195234         CDS       T04363                                 
Symbol
lis1b, lis1-2, pafah1b1-2
Name
(RefSeq) Lissencephaly-1 homolog B
  KO
K16794  platelet-activating factor acetylhydrolase IB subunit alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa00565  Ether lipid metabolism
sasa01100  Metabolic pathways
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09100 Metabolism
  09103 Lipid metabolism
   00565 Ether lipid metabolism
    100195234 (lis1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:sasa03036]
    100195234 (lis1b)
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sasa04147]
    100195234 (lis1b)
Chromosome and associated proteins [BR:sasa03036]
 Eukaryotic type
  Centrosome formation proteins
   Spindle formation proteins
    100195234 (lis1b)
Exosome [BR:sasa04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   100195234 (lis1b)
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 NBCH_WD40 Nup160 LisH Nucleoporin_N Pox_A_type_inc ARMC9_LisH GLD3_KH3 DUF2570 LisH_2 DUF6813
Other DBs
NCBI-GeneID: 100195234
NCBI-ProteinID: NP_001133735
UniProt: B5X3C4 A0A1S2X4V2
Position
ssa04:complement(26484579..26535011)
AA seq 410 aa
MVLSQRQRDELNRAIADYLRSNGYEEAYSTFKKEAELDMNEELDKKYAGLLEKKWTSVIR
LQKKVMELESKLNEAKEEITLGGPVAQKRDPKEWIPRPPERYALSGHRSPVTRVIFHPVF
SVMVTSSEDATIKVWDYEAGDFERTLKGHTDSVQDISFDQTGKLLASCSADMTIKLWDFQ
GFECIRTMHGHDHNVSSVAIMPNGDHIVSASRDKTIKMWEVATGYCVKTFTGHREWVRMV
RPNQDGSLIASCSNDQTVRVWVATSKECKAELREHEHVVECIAWAPDTAHPTILEATSSE
SKKNGKSGPFLLSGSRDKTIKMWDISTGMCLMTLVGHDNWVRGVLVHPGGRFIVSCADDK
TLRIWDYKNKRCMKTLCAHEHFVTSLDMHQTAPYVVTGSVDQTVKVWECR
NT seq 1233 nt   +upstreamnt  +downstreamnt
atggtgctgtcacagagacaacgagacgaactaaaccgagcaatagcagactacctacgc
tccaatggctatgaggaagcctactccaccttcaagaaagaggctgaattagacatgaat
gaggagttagataagaagtacgctggtcttttggaaaagaaatggacctctgtcatcaga
ttacagaagaaggtgatggagctggagtcgaagctgaatgaggccaaagaggagatcact
ctagggggtccggtggcccagaagagggaccctaaggagtggatcccccgtcccccagag
agatacgccctgagcggccaccgctcccccgtcacacgggtcatcttccatcctgtcttc
tccgtcatggtcacctcctccgaggacgccaccatcaaggtgtgggactatgaggcaggg
gactttgagcggacactgaagggccatacagactctgtccaggacatctcctttgaccag
acaggcaagctgctggcttcctgttctgcagacatgaccatcaagctgtgggacttccag
ggcttcgagtgcatccgcaccatgcacggtcatgaccataacgtgtcgtctgtagccatc
atgcccaacggagaccacatagtctccgcctccagagacaagaccatcaaaatgtgggag
gtggccactgggtactgtgtgaagacatttacaggccacagggagtgggtgaggatggtc
cggcccaaccaggatggttctcttattgccagctgttccaacgaccagacggtgcgtgtg
tgggtggccacctccaaggagtgtaaggctgagctgcgagagcacgaacacgtggtggag
tgtatcgcctgggcccccgataccgctcaccctaccatcctggaggctaccagctcggag
agtaagaagaatgggaagtctggtccgttccttctctctggctctagagataagaccatc
aagatgtgggacattagcactggcatgtgccttatgactctggtgggtcatgataactgg
gtacgtggtgtgttggtgcaccctggaggcaggttcatagtgagctgtgctgatgataag
actctgaggatctgggactacaagaacaagcgctgcatgaagaccttgtgtgcccatgaa
cactttgttacctctctggatatgcaccagactgctccctacgtggtgacaggcagcgtt
gatcagacagtcaaagtgtgggagtgtcgctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (10)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (7)   
DNA sequence (9)   
   RefSeq(nuc) (7)   
   GenBank (1)   
   EMBL (1)   
Protein domain (12)   
   Pfam (12)   
All databases (62)   

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