KEGG   Salmo salar (Atlantic salmon): 100196350
Entry
100196350         CDS       T04363                                 
Symbol
ddx39
Name
(RefSeq) ATP-dependent RNA helicase DDX39
  KO
K13182  ATP-dependent RNA helicase DDX39 [EC:5.6.2.7]
Organism
sasa  Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sasa03041]
    100196350 (ddx39)
Enzymes [BR:sasa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     100196350 (ddx39)
Spliceosome [BR:sasa03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    100196350 (ddx39)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII CMS1 P-loop_SecA
Other DBs
NCBI-GeneID: 100196350
NCBI-ProteinID: NP_001134851
UniProt: B5XE76
Position
ssa06:complement(30181774..30188981)
AA seq 427 aa
MAENDADNELLDYEEDEEPQGAPETAAPAGKKEVKGSYVSIHSSGFRDFLLKPELLRAIV
DCGFEHPSEVQHECIPQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCH
TRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCPHIVVGTPGRILALIR
NKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRK
FMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCV
ALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFN
YDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEEIDIS
TYIEQSR
NT seq 1284 nt   +upstreamnt  +downstreamnt
atggctgagaatgacgctgacaatgagttgctggactatgaagaggacgaggagcctcag
ggagccccagagaccgctgccccagcaggcaagaaggaggtgaagggctcctatgtctcc
atccacagctctggcttcagagacttcctgctcaaaccagagctgctccgcgcgattgtc
gactgtggctttgagcatccgtctgaagttcaacatgagtgcatccctcaggccatcctg
ggcatggacatcctgtgccaggctaagtctggtatgggcaagacggcagtgtttgttctt
gccacactacagcagatcgagcctgtggatggacaggtgtcagttctagtaatgtgccac
acacgagagctggccttccagatcagcaaagagtacgagcgcttctccaagtacatgccc
acagtcaaggcagccgtgttctttgggggcctgtctatcaagaaggacgaagatgtgctg
aagaagaactgccctcacattgtggtgggaacccctggccgaatcctggccctcatccgc
aacaagaccctcaacctaaagaacgtcaagcactttgtcctggatgagtgtgacaagatg
ctggagcagttggacatgaggcgtgacgtacaggacatcttcaggctaacaccacatgag
aagcagtgcatgatgttcagcgccaccctcagcaaggagattcgaccggtctgccgcaag
ttcatgcaggatcccatggaggtgtttgtagatgatgagaccaagctgacgctgcacggt
ctgcagcagtactactgcaagctgaaggacagcgagaagaaccgcaagctctttgacctg
cttgatgtgctggagttcaaccaggtggtgatctttgtcaagtcagtgcagcgctgtgtg
gcgctttctcagctactggtggaacagaacttccctgccattgccatccacaggggcatg
gctcaggaggagaggctgtcccggtaccagcagttcaaggacttccaaaggcggatcttg
gtggccactaacctgtttggccgagggatggatatcgagcgggtcaatattgtcttcaat
tacgacatgcctgaggactcagacacatacttacacagggtggcccgtgctggtcggttt
ggaaccaagggtctggctgtgacctttgtgtcagacgagacagatgccaagactttgaat
gacgtgcaggaccgctttgaggtcaatgtggccgagctgccagaagagatcgacatttcc
acttacattgagcagtccagatga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (59)   
   KEGG ORTHOLOGY (1)   
   RefGene (55)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (5)   
   Pfam (5)   
All databases (76)   

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