KEGG   Salmo salar (Atlantic salmon): 100306803
Entry
100306803         CDS       T04363                                 
Symbol
nbp1a, CBP80, ncbp1
Name
(RefSeq) Nuclear cap-binding protein subunit 1-A
  KO
K12882  nuclear cap-binding protein subunit 1
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03013  Nucleocytoplasmic transport
sasa03015  mRNA surveillance pathway
sasa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    100306803 (nbp1a)
  09122 Translation
   03013 Nucleocytoplasmic transport
    100306803 (nbp1a)
   03015 mRNA surveillance pathway
    100306803 (nbp1a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sasa03019]
    100306803 (nbp1a)
   03041 Spliceosome [BR:sasa03041]
    100306803 (nbp1a)
Messenger RNA biogenesis [BR:sasa03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Cap binding complex
     100306803 (nbp1a)
Spliceosome [BR:sasa03041]
 Common components
  Common spliceosomal components
   Cap binding complex
    100306803 (nbp1a)
SSDB
Motif
Pfam: MIF4G_like_2 MIF4G_like MIF4G Jnk-SapK_ap_N AAA_11 Dynein_AAA_lid AAA_13 Vfa1 GBP_C FapA EMC3_TMCO1 RRF Exonuc_VII_L PIN_8 tRNA_bind_2 PHM7_cyt
Other DBs
NCBI-GeneID: 100306803
NCBI-ProteinID: NP_001158814
UniProt: C0H906 A0A1S2X690
Position
ssa05:29113380..29128507
AA seq 796 aa
MSRRRHSDGDDGGQSHKRRRTSEPVEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANL
YTDALYLVRFLCDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYAVLSSLPWV
GKELDEKKDVEMDRLLNQIDGYLKRRLKTHVPMLQVWTAEKPHPQEEYLDCLYAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHMPDCQYPMPRVIFRMFDYTDAPEG
PVMPGSHSVERFVIEDNLHNIIKSHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYVRLDTMNTICIDRLLNWFSHH
LSNFQFRWSWDDWVDCLALDADKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFSGLIPAD
PIFFYKYQDEANSALPGYAVAIAVGNAIKNRASNEEILTVLKDVPNPNQEDDDDEGEGFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEILKALTDCDEGKLHILRVVYEVWKNHPQM
VSVLVDKLIRTQIVDCAAVANWLFSPSMAHEFTRFYVWEILHSTIRKMNKHVQKIQKELE
EAKDKLERQQHKKQKDSGDEEDMEKNSEDEDGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMMLTEHLVRCETGSVDFSTPWYKNCIERLQQIFLMHHVTIQQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq 2391 nt   +upstreamnt  +downstreamnt
atgtcaagaagacggcacagtgacggagatgatggtggccagtctcacaaaagaaggaga
acttctgagcccgttgagattgaggatcgcctggaatcactgatatgtcgagtgggagaa
aagagtacctcttccctggaaagcaacttggaaggtctcgcaggtgtattggaagcggat
ctccccaattacaaaaacaaaatcctgcgcatcttgtgtgctgtggctcgacttctaccc
gagaagctgaccgtgtacacaacactagtgggccttctcaatgccaggaactacaacttt
ggcggggagtttgtggaggccatgatcagacaacttaaagagaccttgaaggccaacctg
tacaccgacgctctttacctggtgcgcttcctctgtgacctggtgaactgccacgtgatc
gctgccccatccatggtggccatgtttgagaactttgttagcgtcactcaggaggaggat
gttccgcaggtgcgttcggactggtttgtctatgctgtactctccagtctcccctgggtt
gggaaggagcttgatgagaagaaggacgtagagatggaccggctcctcaaccagattgac
ggttatctcaagagacgactgaagactcatgtccccatgcttcaggtttggacggcagag
aagccacacccacaagaggagtacctggactgcctgtacgctcagatccagaagctaaag
aaggaccgctggcaggagcgccacatcttgcggccgtacattgcctttgacagcgtgctg
tgtgaggccctgcagcacaacctgccacctttcaccccaccagcccacatgcccgactgc
cagtaccccatgccccgcgttatctttcgcatgttcgactacaccgatgcccccgagggc
cctgtcatgccaggcagccactctgtggagaggtttgttattgaggataaccttcacaac
atcatcaagtcccactggaaagagaggaagacctgtgctgcgcagttgctgagctatcca
gggaaaaacaagatcccactcaactatcacattgtggaggtgatctttggagagctcttt
cagctgccctgtcccccccacatcgacgtcatgtacaccacgctgctcattgagctctgc
aagctgcagccaggctccctgccccaagttttggcccaagccacagagatgatgtacgtg
aggttggacaccatgaacactatttgcatagaccgactactcaactggttctcccaccat
ttgagcaactttcagttccgatggagctgggacgactgggtggactgtttggccctggat
gcagacaagcccaagcccaagtttgtcaaggaggttctggagaaatgcatgaggctctcc
tatcatcagcggatagtggacatcgtccctcccactttctcaggactcatcccagccgac
cccatcttcttttacaaataccaagatgaggccaacagtgcgctgccaggctatgcggtg
gccatagcggtgggcaatgccatcaagaaccgggcctccaatgaggagatcctcaccgtg
ctcaaagacgtgccgaaccccaaccaggaagatgacgacgatgagggcgagggcttcaac
cccttgaagatagaggtgttcctgcagaccctcctccatctggctgccaagtccttcagc
cactccttcagtgccctggccaagttccatgagatcctgaaggccctgacggactgtgac
gagggcaagctgcatatcctccgggtggtctacgaggtctggaagaaccacccacagatg
gtttctgtgctggtggacaagttgatccgtacacagattgtggattgtgcagccgtagcc
aactggctcttctcccctagcatggctcatgagtttaccaggttttacgtctgggagatt
ctgcactccaccatccgtaagatgaacaaacacgtccagaagattcagaaagagctggag
gaggccaaggataagctggagagacaacagcataagaagcagaaggacagtggagacgag
gaagacatggagaagaacagtgaggatgaggacggtcagctggaggagcagatcgagcgt
ctgcaggaaaaggtggagtcggcccagagtgagcagaagaacctcttcctggtcatcttc
cagcgcttcatcatgatgctgacggagcacctggtgcgctgcgagacaggcagtgtggac
ttcagcacaccctggtacaagaattgcatcgagaggctgcagcaaatcttcctcatgcac
catgtgacaatccagcagtacatggggacactggagaacctgctgttcaccgccgagctc
gaccaccacatcctagctgtgtaccagcagttctgtgccctgcagctctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   SWISS-PROT (1)   
   RefSeq(pep) (2)   
DNA sequence (5)   
   RefSeq(nuc) (3)   
   GenBank (1)   
   EMBL (1)   
Protein domain (16)   
   Pfam (16)   
All databases (45)   

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