KEGG   Salmo salar (Atlantic salmon): 106567846
Entry
106567846         CDS       T04363                                 
Name
(RefSeq) THO complex subunit 2-like
  KO
K12879  THO complex subunit 2
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03013  Nucleocytoplasmic transport
sasa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106567846
  09122 Translation
   03013 Nucleocytoplasmic transport
    106567846
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sasa03019]
    106567846
   03041 Spliceosome [BR:sasa03041]
    106567846
Messenger RNA biogenesis [BR:sasa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     106567846
Spliceosome [BR:sasa03041]
 Complex C
  Other components
   EJC/TREX
    106567846
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    106567846
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 106567846
NCBI-ProteinID: XP_013993124
UniProt: A0A1S3LRB4
Position
ssa13:complement(78937920..79010670)
AA seq 1566 aa
MATRIIPADWIKNWEKSGKHEFVQLCKNLAYKTNHDSTIKDIQAALYELCWHVIQGNFKL
DLSASVLCDMMDLRDDMPSILADVFSILDIETSSLEEKNKRDHYTQLVGACLFFVPDAIL
KERLDPETLESLGLIKQAHQFNQKIVKIKTKLFYKQQKFNLLREENEGYAKLITELGQDL
SGNITSHIVLESIKSLIGCFNLDPNRVLDIILEVYECRSDQDEFFLPLIKSYMCEPLTLC
HILGFKFKFNQEPNEETPTSLYHIAAALLHHNLIELEDIYVHLMPLDASIVEEHKREITE
AKQIARKLTMVVVPSEKTEDKEREKEEEKNDKAPDNQKLGLLEALLRIGDWHHAQSIMDQ
MPAFYATSHKAVALALCQLLHLTVEPLYRRAGVPKGAKGCLMRPLRNKRAPRPAESFEDL
RRDVFSMLCYLGPHLSHDPILFAKIVRLGKGFMKEYQSEGRNDNVKDKMDTLLSCFLSIA
DQVLLPSLSLMECNACMSEELWGLFKLFPYQHRYRLYGQWKNETYTSHPLLVKVKAQTVD
RAKYIMKRLTKENVKPSGRQIGKLSHSNPTILFDYILSQIQWYDNLIGPVVDSLKYLTSL
NYDVMAYCIIEALANPEKEKMKHDDTTISSWLQSLASLCGAVFRKYPIELAGLLQYVTNT
LKAGKSFDLLILKEVVQKMAGIEITDEMTSEQMEAMTGGEQLKAEGGYFGQIRNTKKSSQ
RLKDALLDHDLALPLCLLMAQQRNGVVFLEGGEKHLKLVGKLYDQCHDTLVQFGGFLASN
LSTEDYIKRVPSIDILCNQFHTPHDAAFFLSRPMYGHQILSKYDELKKAEKSNRQQQKVH
KYVAACELVMSPVHEAVVSLHPPRVWDDLRPQFYATFWSLTMYDLAVPHNAYDREVKKLQ
VQVKAIEENPDVPMNKKKKEKERCTALQEKLQEEEKKQLEHVQRVLHRLKLEKDNWLLAK
STKNETITKFLQLCLFPRCIFSAIDAVYCARFVELVHQQKTPNFCTLLCYDRVFSDIIYT
VASCTENESRRYGRFLCCMLETVTRWHSDRAVYEKECGNYPGFLTIFRATGFDGGNKADQ
LDYENFRHVVHKWHYKLTKASVHCLETGEYTHIRNILIVLTKILPCYPKVLNLGQALECR
VHKICLEEKEKRPDLYALAMGYSGQLKGRKAHMVPENEFHHKEQPVRSATPVSQQNGPGT
TAKPASKTEEGVSEDADRAKDKSQGAAKPVNKANSTAAKVTTSNGNGAPNSTKSIKERDD
KEKSGKEKKEKKEKTPGNTLETKGESRREKQRDERGAGGKEERAPREGKEKTPKADRDKQ
KAEEKSSKEDNKAKAGNGEPKEPSRERDTGAKESKSKEKGGDRSAMSGSLKSPVPRLESA
ESERDHKRRKLETHSSPSHSSSVKDNSNEPKDSASKHHINYNSVARSKSRERETDKKESE
NARGRSKEKTEDKDRKDRKRDHMTTDREMSLESKRRKDENGTNSSNKHSNSASPSSDSPV
SADKEKTKRSKSSSKEKGESAKPERNSSGGKKESRHDKDKSDKKEKRDSSGGKDEKKHHK
SSDKHR
NT seq 4701 nt   +upstreamnt  +downstreamnt
atggcgacacgtatcatccctgctgattggatcaaaaactgggaaaaatctggaaaacat
gagtttgtacaactatgtaagaatcttgcatacaaaacaaatcatgacagcacaataaaa
gatatacaggcagctttgtatgaactctgctggcatgtcatacaggggaacttcaagcta
gacctttctgctagcgtcctctgtgacatgatggatctgcgggatgacatgccatccatt
ttagcagatgttttcagtatactagacatagagaccagctctttagaggaaaaaaacaaa
cgtgaccattacacccagctagtgggagcgtgtctgttctttgtgccagatgccatcctg
aaggagagactggacccagagaccctggagtccctgggactcataaagcaagctcatcag
ttcaaccaaaaaatcgtaaaaatcaagaccaaactattttacaagcagcagaaattcaac
ttgctgagggaagagaatgagggctatgccaagctgatcactgagctgggccaagacctc
tcaggcaacatcaccagccacatcgtcctagagagcatcaagtccctaataggatgcttc
aacctggaccccaaccgcgttctggacatcatcctggaggtgtacgagtgtcgctctgac
caagacgagttcttcctgcccctcatcaagtcctacatgtgtgaacccctcaccctctgc
cacatcctgggcttcaagttcaagttcaaccaggagcccaatgaggagacccccacgtca
ctctaccacatcgctgccgccctcttgcatcacaaccttatagagctggaggacatctat
gtgcacctgatgccactggatgccagcattgtagaggagcacaagagagaaatcacagag
gccaagcagattgcccgcaagctcaccatggtggtggtgccctccgagaagactgaggac
aaggagagggagaaagaggaggagaagaacgacaaggctcctgataaccagaagctgggt
ctgttggaagcgctgctgaggatcggagactggcaccatgcccaaagcattatggaccag
atgcccgccttctacgccacctctcacaaggccgttgctctggcgctgtgccagctgctg
catctgactgtggagccactgtaccgcagagccggggtccccaaaggggccaagggatgt
ttgatgaggcccctgaggaacaagcgggcccccaggcctgccgagagctttgaggacctg
cgcagggacgtgttcagcatgctctgctacctggggccgcacctctcccatgaccccatc
ctttttgccaagatagtacgcctgggcaagggctttatgaaagagtaccaaagtgagggt
agaaatgacaacgtcaaggacaaaatggacacattgctaagttgtttcctgagcattgca
gaccaggtgctgctgccctcgctctctctcatggagtgtaacgcctgcatgtcagaggag
ctctggggcctcttcaaactcttcccctaccagcacaggtaccggctatacggccagtgg
aagaatgagacttacacaagccacccacttctggtcaaggtcaaagctcagactgtggac
agagccaaatacatcatgaagcgattaaccaaagagaatgtgaaaccatctgggcgccag
ataggcaagctgagccatagcaaccccaccatcctctttgactatatcctgtctcagatc
cagtggtatgacaacctcatcggtccagtggtagactcccttaaatacctcacctcactc
aactatgacgtcatggcttattgcataattgaagcgctggcaaatccagagaaagagaag
atgaagcatgacgacactacgatctcctcctggcttcagagcctggccagtctgtgtgga
gcggtattcaggaaatacccaattgagttagctggcctcctccagtatgtgaccaatacg
ctgaaagcagggaagagttttgacctgttgattctgaaagaggtggtgcagaagatggcc
gggatcgagatcactgacgagatgacatcagagcagatggaagctatgactggaggggag
cagctcaaagcagagggtggttactttggtcagatccgtaacactaagaagtcgtcccag
cgtctaaaggatgccctgttggaccatgatctggccctgcccctctgtctcctcatggcc
cagcaacgcaacggggtggtctttctggaggggggtgagaaacacctcaaactggtgggc
aagctgtacgaccagtgtcacgacaccctggtgcagtttggtggcttcctggcctccaac
ctgagtactgaggactacatcaagcgtgttccctccattgacatcctctgtaaccagttc
cacactccccatgacgctgccttcttcctctcacgccccatgtatggacatcagatcctg
tctaagtatgatgagctgaagaaagctgagaagagcaaccggcagcagcagaaggtccat
aagtacgtggctgcttgcgagctggtgatgtcgccggtgcacgaggccgtagtgtccctg
cacccgccccgtgtctgggacgacctccgaccacagttctacgccaccttctggtcgctg
accatgtacgacctggccgtgccacacaacgcctacgaccgtgaggtgaagaagctccag
gtccaggtcaaggccatcgaggagaaccctgatgtgccaatgaacaagaagaagaaggag
aaggagcgctgcacggccctacaggagaagctgcaggaggaggagaagaagcagctggag
catgtccagagggtcctgcaccgcctcaaactggagaaggacaactggctcctcgctaag
tccaccaagaatgagaccatcactaagttcctgcagctgtgtctgtttcctcgctgtatc
ttctctgccatcgacgctgtgtactgcgcccgctttgtggagctggtgcaccagcagaag
acccccaacttctgcaccttgctctgctatgatcgggtgttctctgacatcatctacacg
gtggccagctgcacggaaaacgagtcgcgacgctacggacgcttcttgtgctgcatgctg
gagacggtgacccgctggcacagtgacagggctgtctacgagaaggagtgtggtaactac
ccaggcttcctgaccattttcagagccacaggcttcgacggagggaacaaagcagaccag
ctggactatgagaacttcagacatgtggtgcacaaatggcactacaagctgactaaagca
tcagtccactgcttggagacgggggagtacacccacatccggaacatcctgatcgtgctg
accaaaatcctgccctgctaccccaaagtgctgaacctgggccaggcactcgagtgccgt
gtccacaagatctgtctggaggagaaggagaagaggccagacctctatgccttggccatg
ggctattctggccagttgaaaggcaggaaggcgcacatggttcctgagaatgagttccac
cacaaggagcagccggtgaggagcgccacccctgtcagccagcaaaacggccctggcacc
acggccaagcctgccagcaagacggaggagggtgtcagtgaggacgccgatcgagccaag
gataaatctcagggtgcagcaaagccagtgaacaaagccaacagcacagcggccaaggtg
accaccagcaacgggaatggggctcctaacagcaccaaaagcatcaaagagagggatgac
aaagaaaagagtgggaaggagaaaaaagagaaaaaagagaagactccaggcaacactcta
gagacgaagggggagagccggcgggaaaagcagagggacgagagaggagcaggcggcaag
gaggagcgggcgccacgcgagggtaaggagaagacgcccaaggcagaccgagacaagcag
aaggcggaagagaagagcagcaaagaggacaacaaggccaaggctggcaacggagagccg
aaggagccatccagggagcgcgacactggagccaaggagtctaagagcaaagagaaggga
ggagacaggagtgccatgtccggatccctcaagtctccagttccccgattggagtctgct
gaatctgagagggatcacaaaaggcgaaaactggagacccactcttcaccatcccattcc
tcctctgttaaggacaatagcaacgaacccaaggactctgcatccaagcaccacatcaac
tacaattcggtcgcgcggtccaagagcagagagagggagacggacaagaaagagtctgag
aatgcccggggccgttccaaagagaagaccgaagacaaagacagaaaggacaggaagaga
gatcatatgaccactgaccgtgagatgagcctagaatccaaacgcagaaaagatgaaaat
ggaaccaattcctccaacaaacacagcaatagcgccagtccctcctcagactccccggtc
tcggctgacaaagagaagaccaagaggtcaaagtcctctagcaaggagaagggagagtct
gctaaacctgagagaaactcctccgggggcaagaaggagtctaggcacgacaaagacaaa
tctgacaagaaggagaagagggacagcagtggtggaaaggatgagaaaaaacatcataag
tcttctgacaagcacagataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (46)   
   KEGG ORTHOLOGY (1)   
   RefGene (42)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (64)   

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