KEGG   Salmo salar (Atlantic salmon): 106569208
Entry
106569208         CDS       T04363                                 
Name
(RefSeq) collagen alpha-1(XVIII) chain-like
  KO
K08135  collagen type XV alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00535 Proteoglycans [BR:sasa00535]
    106569208
Proteoglycans [BR:sasa00535]
 Extracellular matrix (ECM) proteoglycans
  Basement membrane proteoglycans
   106569208
SSDB
Motif
Pfam: Endostatin Collagen Collagen_trimer Laminin_G_3 Laminin_G_2 DUF1554 NigD_N
Other DBs
NCBI-GeneID: 106569208
NCBI-ProteinID: XP_013995809
UniProt: A0A1S3LYP9
Position
ssa14:complement(25717108..25765274)
AA seq 1397 aa
MALLRLYSLLLLMAPVHGQWWSAFLGKAQEMTTQPPTTVPTTTQVLWTTEGTEVGQVGTQ
MEVFTTAPVQSTLLQRIQEPAGAGTTEIKPKAKKIYLKMWKSRERGSTGHLDLTELIGVP
LPPSVSFITGYEGFPAYGFGPDANIGRLTKTFMPDPFFRDFAIIVTIKPSSKQGGVLFAI
TDAQQKVVQLGLALTPVEDETQRIQLYYTEGGEESSRSQQVASFKLPDMRNKWTRFTLSV
QDQEVRLYMDCDDFQAETFHRSSRQLTFEPSSGIFVGNAGGTGLEKFVGSIQQLVIKPDP
RAAEEQCEEDDPYASGDGSGDDTLDDHETKDKLMKNMERKKETARPEDMLSVPVRAPPTE
SPELELDENTVHLNPTNKAHTHQEMLLKGGEETRQTEEPGEKSGDGRPLSHGQKGERGEP
GPMGPAGPRGPPGPSTPSEDRAGHGQPGPRGPQGPSGAPGVPGKDGQPGSKGEDGDPGQR
GPHGFPGLAGEVGVKGDKGDTGVGLPGPPGPPGPPGPLKSHSVPYGEDALGSGFGDLDDT
ELIRGSPGPPGPPGQPGPPGPTRFFEASEGLFPGQPGPSGPPGRDGLVGKPGPPVIEDWF
SGSGSGSAFGSEFGSGLFDSGLGSGEGPTGLDGDAGLTGLKGLKGEQGLAGPNGPKGESG
DPGLTGATGPRGPEGKKGDPGLRGLPGPPGPPGGGFFVEDVEGSGKNDMVLGTELRSPQG
PPGLPGPAGPKGEDGKDGAPGLSVKGEPGASGPEGLQGLAGLPGARGLKGDKGDPGPKGE
CGPDGHNVPGPPGPPGPPGPIINLQDLLLNNTEGMFNITEIRGPPGPMGPEGEPGRAGFP
GPRGPKGDSGLPGFQGPPGMKGAKGEAGVTIAADGTVLSSVRGPRGPKGIKGERGFPGAY
GVMGPIGPTGQKGEYGFPGRPGRPGMAGKKGDQGDAIGQPGLPGPPGPPGPPGPVTGLNG
TVFPVRPRPFCKTPVNGSKGSSQGGRRGNGGAKGEKGEIGLTGMPGEPDDILPEGFVGEK
GDVGYEGMKGDQGEPGLPGPPGLPGRSGLVGPKGESVVGTVGHPGAPGEPGVPGIGRPGS
RGPPGPAGPPGPPPVYGSAVSIPGPPGPPGPPGITGHENPVSTYRNTNSLMRESHRAAEG
SMAYVSDKGELYVRTRDGWRKVQLGELILIPAESPSSAVSQALSRPGDRTRPHRPHSQEL
VGTSYVPNYNVLPHTVHSVPALHLVALNAPFSGDMRGIRGADFQCYQQARAMGLTATYRA
FLSSHLQDLATIVKKGDRYNMPVINLKGEVIYSSWMNIFSGNGGVFDPSIPIYSFEGRNV
MTDPTWPQKLVWHGSSTVGIRMTTNYCEAWRAGDMAVTGQASLLQTGRLLGQHTRSCSNH
FIVLCIENSYIDHRRSN
NT seq 4194 nt   +upstreamnt  +downstreamnt
atggctctcctgcgtctttatagtctgctgctgctcatggctcctgttcatggccagtgg
tggagtgctttcttggggaaagcacaggagatgaccacacagccccccaccaccgtcccc
acaaccacccaggtattgtggaccacagaagggacagaggtgggccaggtggggactcag
atggaggtcttcaccactgcacctgttcagagtaccctgctacagcgcatccaggagcct
gctggtgctggaaccacagagatcaagcccaaggctaagaaaatatatctgaaaatgtgg
aagagtcgtgagcgtggctctacaggacacctagacctgaccgagttgatcggagttcca
ctccctccctctgtctccttcatcaccggctatgagggcttcccggcctacggcttcggg
cctgacgccaacattggacgtctcaccaagaccttcatgcccgatcctttcttcagggac
tttgccatcatcgtcaccatcaagcccagcagcaaacagggaggggtgctgttcgccatc
actgatgcccagcagaaggtggtgcagctggggttggcactgacgcccgtggaggacgag
acccagaggattcagctgtactacaccgaggggggcgaggagtcctcacgcagccaacag
gtggcgtcctttaagttgcctgatatgaggaataagtggacgcgcttcactctgtcggtg
caggaccaggaggtacgcctctatatggactgtgatgacttccaagcagagaccttccac
aggagcagccgccagctcacctttgaacccagctcgggcatcttcgtgggcaatgctgga
ggaactggcctggagaagtttgtgggctctatccagcagctggtgatcaagccggacccc
agggcagcagaggagcagtgtgaagaggatgatccctatgcttctggggatgggagtggg
gatgacacgttggatgaccatgaaacaaaggacaagttgatgaagaacatggaacgaaaa
aaggaaacagcacggccagaggacatgctaagcgtgccagtgagagccccgcccacagag
tctccagagttggagctagatgagaacactgttcacctgaaccccacaaacaaggcacac
acacatcaggagatgctgctcaaaggtggggaagaaacccgtcagacagaggagccaggg
gagaaatcaggggatggcaggcctcttagccacggacagaaaggagagcgaggagagcct
gggcctatgggtcctgctggcccccgtggcccccctggcccttccactccctctgaggat
agggctggacacggccagccaggaccaaggggccctcaggggccttcaggggcccctggg
gtgccagggaaggacggacagccgggaagcaagggtgaagatggagacccaggacaaaga
ggacctcatggattcccaggtttggcaggagaggttggagtcaaaggagataagggggac
acaggagtaggcttgccggggcctccaggccctcccggacctcccggacctctcaaatct
cacagtgtaccgtatggagaggatgcactcggctctggctttggggaccttgacgataca
gaattgatcagaggttcccctggtcctcccggccctccaggtcaacctggcccgcctggt
cccacccgtttcttcgaagcctccgagggcttgttccctggacaaccaggtccttcaggg
ccacctggcagagacggccttgttgggaaacctggaccaccggtgattgaggattggttt
agtggttctggctcgggctctgcgtttggctctgagtttggctcagggttgttcgactct
gggcttggttctggcgagggtcctactggtctggatggggatgctgggctgacagggctt
aaaggtctgaagggtgaacaaggactagctggaccaaacggaccaaagggtgaatcaggt
gacccagggctgacaggagctacaggaccgaggggaccagaggggaagaagggcgaccct
ggacttcgggggctgcctggcccccccggacccccaggaggaggattctttgtcgaggac
gtggaggggtctgggaagaatgacatggtccttggcacagaactcagaagccctcaggga
cctcctggtctccctggccctgcaggaccaaagggtgaagatgggaaggatggggctcct
gggttgtcagtgaagggtgagcctggtgcttctggacctgagggactccaagggctagct
gggttaccaggcgccaggggattgaaaggagacaaaggtgatccaggaccaaagggggag
tgtggtcctgatggacacaatgtacctggtcctcctggtcctcccgggcctccaggacca
atcatcaatctgcaggatctcctcctgaacaatacagagggcatgtttaacatcactgag
atacgtgggccccctggcccaatgggccctgaaggcgagcctggcagagcaggattccct
ggcccaagaggaccaaagggtgacagtgggcttcctggttttcaaggtccaccaggaatg
aagggtgcgaaaggggaagctggtgtcactatcgctgccgatggaactgtgttgtcaagt
gtcaggggccctcgggggccaaaaggaatcaagggtgaacgtggcttccctggagcttat
ggtgtcatgggaccaattggaccaactggacaaaagggagaatacgggttccctggtcga
ccggggcgacctggaatggcagggaagaagggagaccagggagatgccattggtcaacca
ggacttcctggtcctcctggccctcccggacccccaggaccagtaacaggactcaacgga
acagtttttccggtccgtcccagaccgttctgcaaaacaccagttaatggcagcaaaggg
tcgtcacaaggtggcaggagaggaaacggaggtgctaaaggggaaaagggagagattgga
cttactggaatgcctggagaaccagatgatattctaccagaaggctttgtaggagaaaaa
ggagatgtgggctatgaaggaatgaaaggagaccagggtgaacctgggttgcctggccct
ccaggtcttcctgggagatcaggccttgtggggccaaaaggtgagtccgtcgttggcact
gttggtcatcctggagctcctggtgaaccaggggttcctggcattggacgaccaggctct
cgggggccccctggccctgccggaccccctggaccaccccctgtctatggctcagcagtg
agtattcccggcccacctgggcctcccggtcctccagggattactggccatgaaaacccg
gtgtccacatacaggaacaccaacagtctgatgagggagagccaccgtgctgcagagggc
tcaatggcctacgtctcagacaagggagaactctatgttagaactagagatggctggcgc
aaggttcagcttggtgagctcatcctcatcccagcagagagcccatcctctgcagtgtcc
caggccctgagcagaccaggagatcgcaccagaccccacaggccacacagccaggaacta
gttggaactagctacgtgcccaactataatgtcctacctcatacagtacactcagtacca
gcgctgcacctggtggccctgaatgctccgttctctggggacatgcgtggcatccggggg
gcagacttccagtgctaccagcaggcccgagccatgggtctcactgccacctacagagcc
ttcttgtcctcacacctccaggacctggccaccatcgtcaagaagggagaccgctacaac
atgcccgtcatcaacctcaagggagaggtgatctatagcagctggatgaacatcttctct
gggaacggaggcgtgtttgacccatccatccccatctactcctttgaaggacggaacgtc
atgacggaccctacttggcctcagaagctggtgtggcatggctccagtacggtgggcatc
cgtatgaccactaactactgtgaggcatggcgggcgggtgacatggcggtgacgggccag
gcctcgctcctccagacaggcagacttctgggccaacacacccgcagctgctccaaccat
ttcatagtgctgtgtattgagaacagctacattgaccacaggaggtctaattaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (47)   
   KEGG ORTHOLOGY (1)   
   RefGene (43)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (7)   
   UniProt (1)   
   RefSeq(pep) (6)   
DNA sequence (8)   
   RefSeq(nuc) (6)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (72)   

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