KEGG   Salmo salar (Atlantic salmon): 106569953
Entry
106569953         CDS       T04363                                 
Name
(RefSeq) collagen alpha-1(XI) chain-like
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106569953
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:sasa00536]
    106569953
Glycosaminoglycan binding proteins [BR:sasa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106569953
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1 DUF2345
Other DBs
NCBI-GeneID: 106569953
NCBI-ProteinID: XP_013997207
UniProt: A0A1S3M1W6
Position
ssa14:complement(59180470..59225125)
AA seq 2154 aa
MDIRDCPFRKKRRPWRLDFSSFALVTLVLALCQLPVARADPVDVLRMLQLPSLPEGVRKV
PGFCTSRRAGTADHAYRITKKAQISAPTNQLFSGRFPENFSIMALVKAHAGLQAFLLSIY
SEQGVQQLGVELGRSPVFLYEDQTGKPAPEDYPLFSGVNLADGKWHRIAISVSKKNVTLL
LDCKKRMTRALPRSNSPVVDTKGITVFGARLLDDEVFQGDIQQLLIASNPQAAYDFCEHY
SPDCDSPLPKTQSQDPNTYKGANGNADKRKPVVVKADKPIVVKADKPIVVKADKPIVVKA
AKPIVVKAAKPIVVKAEKPVVVKADKPIVVKAPKPVVVKSAKPASSKPAKAEHAKLEATA
KPTKAVPAATKPTKAELYPAKPAKAKPTAIEVLLNKIKPSTVTPVAKPTPAAKKGEKKVN
GKPIVEKRVNGEAKINGNAKPIIEKKVNSNSKVNDKPVVEKKVNGEAKVNGNGKTAEDKK
VSGNGKSGSDKKANGNTEAAKPETTKAQPKKEVTKVKVEKTVVSKVKPAKAETKVVVAKT
EVKVKVVKTEVTKVKEAKTEITKVKPRESVVIKVPPFLKPAPKKELPSPEPASPKPERTK
VVLDVNNVKSMTQKMPPFGKTAYSGTVIPVPEKPKKKTGNGYQQDVETANSEAGHTPTET
DYYYEEAVLQPESEVIGQEGTTGQVEETLVAEEVDLAKAGGEAEAFTEEYVTGDLGMKEY
DYSYKDYNEPLPEGETDGYMGPALSAVTDEGGASVSAVKGEKGEPAVLEPGMLIEGPPGP
EGPAGLPGPNGPSGPPGSVGDPGERGIPGKAGIPGADGIPGPPGTSVMLPFRFGSSGGDK
GPMVSAQEAQAQAILSQARLALKGPPGPMGYTGRTGPLGTPGSSGLKGESGDPGPQGPRG
PQGLSGPPGKSGRRGRAGADGARGMPGEGGPKGDRGFDGLPGLPGDKGHRGDTGGLGPLG
GPGEDGERGDDGDIGPRGLPGEPGPRGLLGPKGPNGIPGPPGVRGNDGPHGPKGNLGPQG
EPGPPGQQGTSGTQGMPGPQGAHGPPGDKGPTGKPGLPGMPGADGPPGHPGKEGPVGTKG
NQGPNGPQGTIGYPGPRGIKGTQGIRGLKGHKGEKGEDGFPGIKGDFGVKGERGEGGVPG
PRGEDGSEGPKGRVGPPGELGPIGLVGEKGKLGVPGLPGYPGRLGPKGSLGFPGFPGTNG
EKGTRGLIGKSGPRGQRGPTGPRGQRGPRGSTGKPGAKGTSGSDGPSGPPGERGLPGPQG
ANGFPGPKGPPGPPGKDGLPGHPGQRGEVGFQGKTGPPGPPGVVGPQGPSGETGPLGERG
HPGPPGPPGEQGLSGPSGKEGTKGDPGPPGGPGKDGPSGLRGFPGERGMPGTPGGGGLKG
SEGPAGPPGTAGSPGERGQAGSGGPIGPPGRPGPQGPPGPSGEKGVPGEKGPIGPAGRDG
VQGPVGLPGAAGSIGVPGEDGDKGEVGEHGQKGAKGGKGEHGPPGPPGPMGPLGQPGAAG
ADGELGARGQQGPFGTKGDEGSRGFPGAPGPIGLQGLPGPSGEKGETGDVGPLGPPGPPG
PRGPAGPSGADGPQGPPGGLGNPGNLGDKGEPGEAGPPGIGGEPGKKGPRGEHGDKGEAG
QPGASGPAGGRGGPGDDGPKGNPGPVGFPGDPGPPGELGPRGQDGAKGERGEDGEQGQAG
SPGPTGENGPPGGPGKRGLAGTRGPEGRQGEKGTKGDPGANGPPGKTGPVGPQGQPGKPG
TEGLRGLPGSVGEQGSPGLAGQKGPPGPLGPPGLPGLRGEGGDKGEKGHSGLIGLIGPPG
EQGEKGDRGLPGPQGTNGYKGETGVSGGTGPIGPGGPAGMPGPQGVKGAKGATGGSGPKG
EKGVSGPPGPPGPPGDVIQPLPIQISKKSKRSIDASRMLSETDAEAVAADATGTEFLTGS
EGMEEIFGSLNSLRQEIETMRFPLGTKDSPARTCQDLKLGQPELKDGEYWIDPNQGCSRD
SLKVFCNFTAGGETCLYPSKSVDTVKLSSWTTEKPGSWYSEFATGSKLSYVDSNGEPIGV
VQLGFLRLLSVQARQNLTYHCHRSVAWADRTANNGHKRALHFQGANDEDLSYETSPYIKA
LVDGCSYRKGFDRTVVEVNTPQVEQLPLRDLKITDFGESNQKFGFEVGPVCFLG
NT seq 6465 nt   +upstreamnt  +downstreamnt
atggatattcgagattgcccctttcggaagaagcggagaccatggcgcttggacttttcc
tcttttgccttggtaaccctggtgctcgcgctgtgccaactacccgtggctcgggcagat
ccagtggatgtgttgcggatgctgcagctgccctctctccccgaaggggtgcggaaggtt
ccaggcttctgcacctcccgccgtgccggcaccgctgaccacgcctaccgcatcaccaag
aaggcccagatctctgcccccaccaatcagctcttctcaggtcgtttcccggagaacttc
tccatcatggctctggtcaaggcccatgcgggcctccaggccttcctgttgtccatctac
agtgagcagggtgtccagcagctgggtgtggagctgggacgctcccccgtcttcctgtac
gaggaccagaccggcaagcccgcccccgaggactaccccctcttcagcggcgtcaacctg
gccgacggcaagtggcaccgcatcgctatctccgtgtcgaagaagaacgtcaccctgctc
ctggactgtaagaagcgcatgaccagggccctgcctcgcagcaacagccccgtggtggat
accaagggcatcaccgtgttcggagcacgcctgctggacgatgaggtcttccagggcgat
atccagcagctgctgattgcatccaaccctcaggctgcttatgacttctgtgaacactac
agccccgactgtgactcccccctacccaagacccagtcccaggaccccaacacatacaag
ggtgccaatggcaatgctgacaaacgcaaacctgtggtagttaaggcagacaaacctata
gtcgttaaggcggacaaacctatagtcgttaaggcagacaaacctatagtcgttaaggcg
gccaaacctatcgtcgttaaggcggccaaacctatcgtcgttaaggcagaaaaacctgta
gttgttaaggcggacaaacctatagtcgttaaggctcccaaacctgtagtagttaagtcg
gcaaaacctgcctcatccaaacctgcgaaagcagagcatgccaagcttgaggccacagcc
aaaccaactaaagccgtacctgctgccaccaagcccaccaaagccgagctttacccggcc
aaaccagccaaagccaaacctactgcaattgaagtcctcctgaacaagatcaaacccagt
acagtcacaccagtggccaagcccacacctgctgcgaaaaagggcgaaaaaaaagttaat
ggcaagcctatagttgagaagagagtaaatggtgaggccaaaatcaatggcaatgccaaa
cctataattgagaagaaagtaaatagtaattccaaggtcaatgacaaacctgtagttgag
aagaaagtaaatggtgaggccaaagttaatggcaatggtaaaaccgctgaggataagaaa
gtgagtggtaatggcaaaagcggcagtgacaaaaaagctaatggcaatacagaagcagca
aaacctgaaaccactaaagcccagccaaaaaaagaagtcactaaagttaaagtagaaaaa
actgtggtcagcaaagtgaaaccagcaaaagcagaaaccaaagtagtggtagcaaaaacc
gaagtcaaagttaaagtagtaaaaaccgaggtcacaaaggttaaggaagcgaaaactgag
atcactaaagtcaaaccaagagagtcagttgtcatcaaagttcctcccttcctcaaacct
gcaccgaagaaagagctgccaagcccagaacctgcttcccctaagccagagagaaccaag
gtggtgcttgatgtaaataacgtcaaatcgatgacccaaaaaatgcctcccttcggcaag
actgcatacagtggcaccgtcatccctgtgccggaaaaaccaaagaagaaaacgggcaac
ggttatcaacaggatgtagaaactgcaaattctgaggctggccacacccctacagagacg
gattattattacgaggaggcggtcctacagccagagagtgaggtgattggacaagaaggg
accactggccaggtggaggagacgttggtggcagaggaggtagatttggccaaggcaggt
ggtgaggctgaggcctttactgaggagtatgtgactggagacctgggcatgaaggaatac
gactattcctacaaggactacaacgagcctctgcccgaaggagagactgacggctacatg
ggccccgccctgtccgctgtgacagacgagggaggcgcctcagtgagtgccgtaaaagga
gagaagggagagcctgctgtccttgagcctggtatgttgattgagggacctccaggacca
gagggaccagcaggtctccccggacctaatggcccatctggccctcctggctctgttggt
gatcctggcgagaggggaatccctggaaaggctggtatccctggtgccgatggcatccct
ggcccccccggaacgtctgtcatgctgcccttccgttttggaagcagtggaggagacaag
ggtcccatggtctcagcacaggaagcccaggctcaggccattctgtctcaggccaggctg
gctctgaagggaccacctggaccaatgggctacactggacgcacaggacctctgggtacc
cctggaagttctggtctgaagggtgagagtggggatcctggacctcagggccccagagga
ccacagggtttgagcggacctcccggcaaatcaggaagaagaggtcgtgctggagctgat
ggcgccagaggcatgccaggagagggcgggcctaagggtgaccgtggttttgacggcctg
cctggattgcccggagacaaaggacacaggggtgatactggaggattgggacccctagga
ggtcctggagaggacggagagaggggagacgatggagacatcggacccagaggacttcca
ggtgaacccggacctcgtggtttgctcgggcctaaaggtccgaacggaatccccggccct
cctggtgtgcgtggaaacgacggtccccacggtcctaaaggaaacctgggtccccaagga
gagccagggcccccagggcagcagggtacctcaggaacacaggggatgccagggccacag
ggagcccacggccccccaggagataagggccccacaggaaaacctggtctgccaggaatg
cccggagccgacggcccccctggtcacccaggaaaggagggacctgttggcaccaaagga
aaccagggtcccaacggtcctcagggaactattggctatcctggccctcgtggcattaag
ggaactcaaggtatccgtggactgaagggtcacaaaggagagaagggagaagatggcttc
ccaggaattaaaggagactttggtgtcaagggggagagaggagagggtggagtacccggc
cccagaggagaggacggttctgaggggccaaagggtcgtgttgggccccctggcgagctc
gggcccattggtctggttggagagaagggtaaacttggtgttcctggacttcctggctat
cctggaagacttggacctaagggctccctcggtttcccaggattcccaggaaccaacggc
gagaagggaacaaggggtctgattggaaagtctggacctagaggacaaagaggaccaacg
ggccccagaggtcagagagggccaagagggtctactgggaaaccaggagccaagggtaca
tcaggaagtgacggcccatctggtccaccaggagagaggggactgcctggacctcaagga
gcaaacggtttcccggggccaaagggacctcccggaccaccaggaaaggatggactgcct
ggacaccctggacagagaggagaagttggattccaaggaaagactgggccacccgggcct
ccaggtgttgttggacctcagggtccctcaggagagactggccccctgggcgagcgcggt
caccccgggcctccaggaccaccaggcgagcagggactctccggaccatctggcaaggag
ggaacgaagggagatcctggtcccccaggcggccccgggaaagacggcccctcaggactg
agaggcttccccggagagagaggaatgcctggcaccccgggaggtggcggactgaaagga
agtgaaggcccagcaggacctcccggaacagctggatccccaggtgagagaggacaggca
ggcagcggaggtcccatcggacccccaggaagacccggcccccaggggcctccaggacca
tcaggagagaagggagtgcctggtgagaaaggtccgatcggcccagctgggcgtgacggt
gtccagggcccagtgggtctgccaggtgcagccggttccatcggagttccaggagaggac
ggggacaagggtgaggttggagagcacggccagaagggagcgaagggcggcaaaggagag
catggtcctcccggtccaccagggccaatgggtccactcggtcaacctggcgctgctgga
gctgatggagaactaggagccagaggtcagcaggggccatttggaaccaagggagatgaa
ggatcaagaggattcccaggggccccaggtcctattggactgcagggattgccaggccca
tcaggagagaagggagagactggagatgtcggaccattgggtccacctggccccccagga
ccccgtggccctgctggtcccagcggtgcggacggtcctcaaggtcctcctgggggtctg
ggtaaccctggaaacctgggagataagggagagcctggtgaagctggaccacctggaatc
ggaggagagccaggaaagaagggcccacgtggagagcacggtgacaagggagaggcggga
caacctggtgcttctggccctgctggtggaagaggaggccctggagacgacggacccaaa
ggaaaccctggccctgttggtttccctggcgaccccggtccccctggtgaactcggtccc
agaggtcaagatggagcaaagggagagagaggagaggacggcgaacaaggacaagctgga
tctccaggacccactggtgagaatggacctcctggtggacctggaaagaggggtcttgct
ggaacgagaggaccagagggacgacaaggagagaagggaactaagggagacccaggtgct
aacggacctccaggaaagacaggccccgtcggacctcagggtcaaccagggaaaccagga
acggagggtctgagaggactccctggatcagtgggcgaacaaggttctccaggccttgcc
ggccagaagggacctcccggaccactgggaccaccaggcttgccaggactgcgcggcgag
ggcggtgacaagggagagaagggccactcaggtctgattggtctgattgggccccccgga
gagcagggagagaagggagacaggggactgccagggccacaggggacaaacgggtacaag
ggagagactggtgtctctggaggcactgggcctatcggtcctggtgggcctgctggcatg
cctggtccccaaggtgtcaagggagctaagggtgctacaggaggatctggtcccaaggga
gagaagggtgtctcaggaccccccgggcctccaggtcctccaggcgatgtcatccagccg
ctgcccatccaaatctccaagaagtccaagcgctccatcgatgccagccggatgctgtcc
gagacagacgcagaagcggtcgcagctgacgccaccggcacagagttcctgacaggcagt
gagggcatggaggagatcttcggctcactgaactcgctgcgacaggagatcgagaccatg
cgcttccctctgggcaccaaggacagccctgcacgcacctgccaggacctgaaactcggc
cagccagagctcaaagacggagagtactggatcgacccgaaccagggttgctctcgcgac
tctctcaaggtgttctgtaacttcaccgccggtggggagacctgcctgtaccccagcaag
agcgtggacacggtaaagctcagctcttggaccacagagaaaccaggctcctggtacagt
gagtttgcaactggcagcaagctctcgtacgtggactctaatggcgagccgatcggcgtg
gttcagttgggcttcctgcggctgctgagtgtccaggcccgccaaaacctcacctaccac
tgccatcgctccgtggcctgggccgaccgcacggccaataacggccacaagagggcgcta
cacttccaaggcgccaacgatgaggaccttagctacgagaccagcccatacatcaaggcc
ctggtcgacggctgttcttatcgtaagggcttcgacaggacagtggtggaggtgaacaca
ccccaggttgagcagcttcctctgcgggacctcaagatcacagactttggggagagcaac
cagaaatttggctttgaagtgggacctgtctgtttcctgggctaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (64)   
   KEGG ORTHOLOGY (1)   
   RefGene (60)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (6)   
   UniProt (1)   
   RefSeq(pep) (5)   
DNA sequence (5)   
   RefSeq(nuc) (5)   
Protein domain (6)   
   Pfam (6)   
All databases (85)   

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