KEGG   Salmo salar (Atlantic salmon): 106570868
Entry
106570868         CDS       T04363                                 
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like
  KO
K12603  CCR4-NOT transcription complex subunit 6 [EC:3.1.13.4]
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106570868
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sasa03019]
    106570868
Enzymes [BR:sasa01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.4  poly(A)-specific ribonuclease
     106570868
Messenger RNA biogenesis [BR:sasa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106570868
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     106570868
SSDB
Motif
Pfam: Exo_endo_phos LRR_8 LRR_4 LRR_1 type_II_gspD_N0
Other DBs
NCBI-GeneID: 106570868
NCBI-ProteinID: XP_013998911
UniProt: A0A1S3M7G9
Position
ssa15:complement(3586101..3613007)
AA seq 570 aa
MPKEKYDSPDPRRLYTIMSAEEAANGKKSHWAELEISGRVRSLSSSLWTLTHLTALHIND
NNLSRIPPDIAKLPHLAYLNLSSNKLRSLPAELGNMVSLRELLLNNNLLRVLPYELGRLF
QLQTLGLKGNPLSQDILNLYQESDGTRKLLNYMLDNLAVHPEQLPQRPWITLKERDPMIP
TAMFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEITHCDADIISLQEVETEQ
YYALFLETLKDHGYDGYFCPKSRAKLVSEQERKHVDGCAVFFKTEKFTLVQKHTVEFNQV
AMANSEGSEVMLNRVMTKDNIGVAVLLEVNKDIFSGGMKPLQETQFLLVANAHMHWDPEF
CDVKLIQTMMFLSELKSITERALSSVATGSPTSDPTSIPIVLCADLNSLPDSGVVEYLSN
GGVAENHKDFRELRYNEALSNFSCQGKNGPSDGSITHSFQLKSAYQGSLMSYTNYTYDFK
GVIDYIFFSKTHMSVAGLLGPLESQWLTDNNITGCPHPHIPSDHFSLLAQLELHPPVTTS
LNGLHLPVHSLPERVRTGGISGPILPQIFI
NT seq 1713 nt   +upstreamnt  +downstreamnt
atgccaaaggaaaaatatgattccccggatcctcgccgattatacaccatcatgtcagcc
gaggaggcagccaacgggaagaagtcacactgggccgagctggagatatcaggtcgggtc
agaagtctgagcagttctctgtggaccctcacccacctgacggctctacacatcaacgac
aacaacctgagtcgcatcccgcccgacatcgccaagctgccacacctggcctacctgaac
ctgtcgtccaacaagctccgaagcctgcccgccgagctcggaaacatggtgtctctcagg
gagttgcttttaaacaacaatcttttgcgagttctaccttacgaactcgggcggctgttc
cagttacaaaccctggggctaaaaggtaaccctttgtcccaagacatcctcaacctgtac
caggaatcagacggaaccagaaagctcttgaactacatgcttgacaatctagcagtgcac
ccagaacaactcccccagagaccttggatcaccttgaaggagcgagacccaatgatcccc
acagccatgttcacagtgatgtgttacaacgtgctgtgtgacaagtacgccacccgtcag
ctgtatggctactgcccctcctgggccctcaactgggagtacaggaagaagggcatcatg
gaggaaatcacacactgtgacgctgacatcatcagtctacaggaggtggagacggagcag
tactacgccctcttcctggagactctaaaggaccatgggtacgacgggtacttctgccca
aagtctcgtgccaaactggtctcagaacaggagaggaagcacgtggacggatgtgctgtg
ttcttcaagactgagaaatttactctggtgcagaaacacacggtggagttcaaccaggtt
gccatggcaaactctgagggttcagaggtcatgttgaacagggtcatgaccaaggacaac
atcggggtcgctgtcctgctggaggtcaacaaggacatattctctggtggcatgaagcct
ctgcaggagacacagttccttctggtggctaacgcccacatgcactgggacccagagttc
tgtgacgtcaagctgatccagaccatgatgttcctgtctgagctgaagagcatcacagag
agggcgctgagctccgtggcaacaggctccccgacctccgaccccacctccatccctatc
gtgctctgtgctgacctcaactccctgccagactctggtgtagtggagtatctgagtaac
ggtggtgtagcagagaaccataaggacttcagagagctgcgctacaacgaagctctcagc
aacttcagctgccaggggaagaacggcccttctgacggcagcatcacacacagcttccag
ctgaagagcgcctaccagggcagcctcatgtcttataccaactatacgtatgacttcaag
ggcgtgatcgactacatcttcttctccaagactcacatgtctgtagccggcttgctcggt
cccctggagtctcagtggttaacggacaacaacatcaccggctgtccccacccccacatc
ccctctgaccacttctctctgctcgcccagctggagctccacccgcccgtcaccacctcc
ctcaacggcctgcacctgcccgtccacagcctgcctgagagagtgagaacggggggcatt
tctgggcccatactcccccagatcttcatttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (1)   
   RefSeq(pep) (4)   
DNA sequence (6)   
   RefSeq(nuc) (4)   
   GenBank (1)   
   EMBL (1)   
Protein domain (5)   
   Pfam (5)   
All databases (34)   

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