KEGG   Salmo salar (Atlantic salmon): 106576804
Entry
106576804         CDS       T04363                                 
Symbol
polr1b
Name
(RefSeq) RNA polymerase I subunit B
  KO
K03002  DNA-directed RNA polymerase I subunit RPA2 [EC:2.7.7.6]
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    106576804 (polr1b)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sasa03021]
    106576804 (polr1b)
Enzymes [BR:sasa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     106576804 (polr1b)
Transcription machinery [BR:sasa03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     106576804 (polr1b)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_1 RNA_pol_Rpb2_3 RNA_pol_Rpa2_4 RNA_pol_Rpb2_7 RNA_pol_Rpb2_2 DUF1186
Other DBs
NCBI-GeneID: 106576804
NCBI-ProteinID: XP_014009709
UniProt: A0A1S3N2L5
Position
ssa18:7065196..7080893
AA seq 1134 aa
MDFANKWSSLLTSPSLKHLTEAGFGIPKEKQHAAVQDLTKAHIESFDQAVSDGLCRAVQS
IRPLEFMFKNDRISLAFVEATIFKPVVGKGSICRDLRVFPAECRGRRCSYRGKLVADVSW
SVNGVPKGIIKQSLGQLPIMVKSRLCNLHGLPPKELIEHHEEAEEMGGYFIVNGNEKVIR
MLIMPRRNYPIAMSRPKWKNRGQGYTQYGISMHCVKEEHTAINMNLHYLDNGTVMLNFIY
QKELFFLPLGFALKALVDFTDFQIYQELIKGREANSFYKSCVSEMLRLVMEEGCITRGKV
LNYLGERFRVKMNLPEWYTHEQCANYLLDQCICIHLKSDVEKFYLLCLMTRKLFTFAKQE
CMEENPDSLMCQEVLTPGRLYLMFLKEKMAAWMVSVKLAMDKRAHRLTGGVSSDNLVKMF
NMGSDVTHPFEYLLATGNLTSKTGLGMLQNTGLCVVADKLNFIRYLSHFRCVHRGAAFAK
MRTTSVRRLLPESWGFLCPVHTPDGEPCGLMNHMTAHCEIIAPALPTTTLPALLCSLGVT
PVDGSPGKAYTDCYPVLLDGAMVGWVETELAPFLADSLRRFKVLKEKKIPPWTEIVLVPQ
TSKASMYPGLYLFTTPCRMVRPVRNLALGQQELIGTFEQLYINVGISEDEIEPGVTTHQE
LFLHSMLSVVANFIPYSDHNQSPRNMYQCQMGKQTMGFPLHSFQDRSDNKLYRLQTPQSP
LVRPVMYDHYNMDNYPIGTNAIVAVISYTGYDMEDAMILNKSSWERGFGHGCVYKTELVD
LAEKMKGEDNLVFGVKPGDPKVMDKLDTDGLPYIGAVLQHGDPFYSYINLNTGQSFVNFY
KSQESCVVDNIKVCSNDVGSGRFKRVCITVRVPRNPTIGDKFASRHGQKGILSRLWPAED
MPFTESGMTPDILFNPHGFPSRMTIGMLIESMAGKSGALHGLCHDATPFTFSEENSALEH
FGDMLRAAGYNHYGTERLYSGLSGLELEADIFIGVVYYQRLRHMVSDKFQVRTTGARDKV
TNQPVGGRNIQGGIRFGEMERDALLAHGTSFLLHDRLFNCSDRSVAQVCVDCGSLLSPLL
EKPPPYWSATRHRKTVCLLCGKSDSIDTVSVPYVFRYFVAELAAMNIKIKLDVK
NT seq 3405 nt   +upstreamnt  +downstreamnt
atggattttgcgaataagtggagtagtttactgacaagtccaagccttaaacatttaaca
gaagcaggcttcggcataccgaaggaaaaacaacatgccgctgttcaggacctaacgaag
gctcatattgagtcgtttgaccaagcagtttcagatggactgtgtcgtgctgtacagtcc
atccgtcccttggagtttatgtttaaaaatgaccggatcagcctggcatttgtggaggcc
accatctttaaaccagtggtgggcaaaggaagcatctgccgggacctgagggtgttccca
gcagagtgcagagggagacgctgctcctaccggggaaagcttgtggcagatgtcagctgg
tccgtgaatggggttcccaaaggcatcatcaagcagtctctgggccagttgcccatcatg
gtgaagtctaggctgtgtaacctgcatgggctccctcccaaagagctcattgagcaccat
gaggaggctgaggaaatgggtggttattttattgtgaatgggaacgagaaggttattcgc
atgctgatcatgccaaggaggaactaccctatcgctatgtcaaggccgaagtggaagaac
agaggccagggatacactcagtatggtatctcaatgcactgtgtgaaggaggagcacacc
gctatcaatatgaacctgcattacctggacaacgggactgtgatgctcaacttcatatac
cagaaagagctcttcttcctccccctgggctttgcactaaaggctctagtggacttcaca
gacttccagatttaccaggagctgatcaaaggtcgtgaggcgaactccttctacaagagc
tgtgtgtctgagatgctgcgactcgtcatggaggagggctgcatcacccgcggcaaggtg
ctcaactacctgggcgagcgcttccgggtcaagatgaacctgccagagtggtacacccac
gaacagtgtgccaactacctgctagaccagtgcatctgtatccacctgaagtcggatgtg
gagaagttctacctgctgtgtctgatgacgcggaagctgttcacgtttgccaagcaggag
tgtatggaggagaacccggacagtctgatgtgtcaggaggtgctcacgccaggacggctt
tacctaatgtttctcaaggagaagatggctgcctggatggtgtctgtgaaactggctatg
gacaagagggcccataggctgactggtggggtgagctctgataatctggtgaagatgttc
aacatgggctctgatgttacccatccctttgagtatctgctagccactgggaatctcact
tcaaagacgggtctgggcatgctccagaacacgggactgtgtgtggtggccgacaagctc
aacttcatccgctacctgtcccacttccgctgcgtgcacagaggggcagcctttgccaag
atgaggaccacctccgtacgtcgtctgctgcccgagtcctggggcttcctgtgccccgtg
cacacccccgacggagagccctgcggcctcatgaaccacatgacggcccactgtgaaatc
atagccccggccctgcccaccaccaccctccctgccctgctctgctccctcggtgtgact
cctgtggatggttctcctggcaaggcctacactgactgctatcctgtgctcctggatggt
gccatggtgggttgggtagagactgagctggcccccttcctcgcagactccctccgcagg
ttcaaggtgttgaaggagaagaagatccctccctggactgagatagttctggttccccag
accagcaaggccagcatgtacccaggcctgtacctcttcaccaccccctgccgcatggtg
cggcctgtccgcaacctggccctgggccagcaggaactgatcggcacctttgaacagctc
tacatcaacgtgggcatcagtgaggatgagatcgagccgggtgtgaccacccaccaggag
ctcttcctccacagcatgctgagcgtggtggctaacttcatcccttactcggaccacaac
cagagtcccaggaacatgtaccagtgccagatgggtaaacagacaatgggcttccccctc
cactcgttccaggaccgctcggacaacaagctgtaccgccttcagacgcctcagagccct
ctggtcaggcctgtcatgtacgaccactacaacatggacaactaccccatcggcaccaac
gccattgtcgctgtgatctcctacactggctacgacatggaggacgccatgatcctgaac
aagtcgtcatgggaaaggggctttggtcatggctgtgtttacaagactgagctggtagac
ctggcagagaagatgaagggcgaggacaacctggtgtttggggtcaaacccggtgacccc
aaggtaatggacaaactggacactgatgggctgccctacatcggcgcagtgctacaacat
ggagaccccttctacagctacatcaacctcaacaccgggcagagctttgtcaacttttac
aagagtcaagaaagctgtgtagtagacaacatcaaggtgtgcagcaacgacgttggctcg
ggccgcttcaagcgcgtctgcatcaccgtgcgagtgccccgtaaccccaccatcggggac
aagttcgccagccgccacgggcagaagggcatcctgagccgcctgtggcctgccgaggac
atgcccttcacagagagcggcatgacccccgacattctgttcaaccctcacggcttccct
tcccgcatgaccatcggcatgctcatcgagagcatggctggcaagtcgggcgccctccac
ggcctgtgccacgacgccactcccttcactttctccgaggagaactcggcactggagcat
tttggggacatgttgcgcgctgccggctacaaccactacggcaccgagcgcctctacagc
ggcctcagcggcctggagctagaggcggacatcttcatcggcgtggtctactaccagagg
ctgcgtcacatggtctccgacaagttccaggtgaggaccactggcgcgcgggacaaggtg
accaaccagccggtgggcggaaggaacatccaggggggcatccgcttcggggagatggag
cgcgacgccctgctggcccacgggacctccttcctgctccacgaccgcctcttcaactgc
tctgaccgctctgtggcacaggtgtgtgtggactgtggtagcctactgtcccctctactg
gagaaaccaccaccctactggtcggccacacgccaccgcaagactgtctgcctcctctgc
ggcaagagtgactccatcgatacggtgtctgtgccatacgtcttccgctactttgttgcc
gagctggcggcgatgaacatcaaaatcaaattggacgtgaagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (27)   
   KEGG ORTHOLOGY (1)   
   RefGene (23)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (45)   

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