KEGG   Salmo salar (Atlantic salmon): 106579408
Entry
106579408         CDS       T04363                                 
Name
(RefSeq) integrin alpha-X-like
  KO
K06461  integrin alpha M
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04145  Phagosome
sasa04514  Cell adhesion molecules
sasa04810  Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04514 Cell adhesion molecules
    106579408
 09140 Cellular Processes
  09141 Transport and catabolism
   04145 Phagosome
    106579408
  09142 Cell motility
   04810 Regulation of actin cytoskeleton
    106579408
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:sasa04131]
    106579408
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sasa04147]
    106579408
   04515 Cell adhesion molecules [BR:sasa04515]
    106579408
   04090 CD molecules [BR:sasa04090]
    106579408
   00536 Glycosaminoglycan binding proteins [BR:sasa00536]
    106579408
Membrane trafficking [BR:sasa04131]
 Endocytosis
  Phagocytosis
   Integrins (complement receptors)
    106579408
Exosome [BR:sasa04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   106579408
Cell adhesion molecules [BR:sasa04515]
 Integrins
  Integrin alpha subunits
   106579408
CD molecules [BR:sasa04090]
 Proteins
  106579408
Glycosaminoglycan binding proteins [BR:sasa00536]
 Heparan sulfate / Heparin
  Adhesion molecules of cell surface
   106579408
SSDB
Motif
Pfam: VWA ITGAX-like_Ig_3 FG-GAP VWA_2 Integrin_A_Ig_2 Integrin_A_Ig_1 FG-GAP_3
Other DBs
NCBI-GeneID: 106579408
NCBI-ProteinID: XP_014014772
UniProt: A0A1S3NH99
Position
ssa19:complement(62220457..62283452)
AA seq 1142 aa
MTMDWIIPLSFYLSVPQGALAFNIDPVAWKYVSEPAAAGFGYKVEQRNPTSLLISAPMVQ
YEQNRRGQVYRCLVRDSSCTPLSIQVPSHGINMSLGLSMTKDPDSLKIMVCGPTIPRECK
TITTYNGMCFEIDQNLNVRQPVPSSLEECPGQTDIAFLLDGSGSVGRSDFEKMKTFVKDL
IKEFLERDTKFAVAQYSGYCTIHFDLNTFNVMYWDNQVSSIKQQGGGTYTAAAIQKVVQD
VFSTSRGSRPKAKKILIVITDGQSNDSGMLGDAASKADAKNIIRFAIGVGQAFSLPYAKR
ELETIASSPSKNYVFQVDNFQALGQIKDTLQNSIFPIEGSQTTGESIKMEMAQEGFSAAY
MPEGGFQMGAVGAFQWRGAYQEYTGSTLNPTPQQSQNMEPDSYMGYSMAVARTHTRQFTI
LGAPRFKHTGRVVFLSSRDTDKPIEFSGQIGAYFGAEVCAMDVNKDSYSDLVLISAPMFT
DGDREGRVYVCTINDRFGVACQLVAEMTLVGDAGQMGRFGTSLAPLPDLNMDGFNDLAVG
APLENDGQGSVYIFHGTSSGISKIKSQRISASDVQSGLKYFGQSISQTSLDMSLDSLPDL
AVGSKGAVLLLRSRPIVTLMARVSFNPDKIPTNQSDCSTPLRNIAEVCFTMTRQTTDTKD
LQAKINYTLTLDVTRQAPNYRAYISPKIRKETKTITLRLQKRCFSHNFFTEACPEDSLNE
LSNELDFTFEGLPTSPGGLSSSLSPQSPTTTYHPLGFEINCGADNNCIDNLKVDFNFTRS
SEVRVGIDEVINVTVSVESREENSYNSHIILTYPAGLSFRKFTILQGRVECNSSDSVGNV
MGGQSDCTIDKPIFKSNSKALLVISYGIDSKTQFGQMMVFTANASSGNTHSRESELFKVK
EIGVKYSIFVVIKRNEDSTSYVNFTAGKNDLQKHVKQSFEVENYGRGFNVTVIIKVPMKL
GDKDIWADPNGIQIQGCQRHKDEEPTATEFVDKLQKNHAVDCSVANCGVFICKSVIRNQD
RNSYNITGNLSSGWIEQIGLESAQFNLVSSATVDYDRNQYIYYSSDSKNNPPIQKIETQV
EVYPEVDFTKGVIGGVVGGLLLLALITAGLYKAGFFKSQLKQMMQNTSEDGPGNDGEAAS
PE
NT seq 3429 nt   +upstreamnt  +downstreamnt
atgacaatggattggataatacctctttcattctacttatcagtgcctcaaggtgctttg
gcttttaacattgaccctgtggcttggaagtatgtcagcgaacctgctgctgctgggttt
ggatacaaggtggaacagaggaacccaacaagcctgcttataagtgcccccatggtgcag
tatgagcaaaataggaggggacaagtttaccgatgcctggtcagagattcatcttgcaca
ccattgtcaatacaagtgcccagtcatgggatcaatatgtctcttggtttgtcaatgaca
aaggatccagattcactaaagatcatggtgtgcggaccaaccatcccaagagagtgcaaa
accatcaccacctacaacgggatgtgctttgaaattgaccaaaatcttaatgtgagacaa
cctgtcccttcatctctggaagaatgtcctggacaaacagacatagcctttctattggat
gggtcaggaagtgttggcagaagtgattttgaaaaaatgaaaaccttcgtgaaagatctg
atcaaggaatttctggaaagggatactaagtttgcagttgcccagtattcaggctattgc
actatacattttgacttaaacacttttaatgtcatgtattgggataatcaagtgagtagt
attaaacaacaaggtggagggacttacacggcagcagccatccaaaaagttgtccaagat
gtcttttcaacgagtagaggatcgagaccaaaggcaaagaagatcttgatcgtcattaca
gatggacaatcaaatgacagcgggatgctgggggatgcagcctctaaggctgacgccaaa
aacattattcgatttgccattggggtgggccaagccttttctttgccctatgcaaaaagg
gagttagaaacaattgcctcctctccatcgaagaactacgtgtttcaagtggacaacttc
caagcacttggccaaatcaaggatacattacagaacagcatttttcctattgaaggatct
cagactactggggaatctattaagatggaaatggcccaggagggattcagtgcagcatac
atgcctgagggaggattccagatgggagctgttggagccttccaatggaggggggcttac
caggaatacacagggagcactttaaaccctacaccacaacagagtcagaacatggaacca
gatagctatatggggtactccatggcagttgctaggacacacactcgccagtttaccatt
ttaggtgctccaagatttaaacacactggacgagtggtgtttctttcatccagagacaca
gacaagccgatagaattttctggacagattggcgcttattttggggcagaggtctgtgcg
atggatgtgaataaagactcatatagcgacctagtcctcatatcagctccgatgttcaca
gatggagacagagagggcagggtatatgtctgtaccatcaatgacaggtttggagtggcc
tgtcaattagttgccgagatgacactggtgggggatgcaggacagatgggcaggtttgga
acttctcttgccccactgcctgacctgaatatggatggatttaatgatttagctgtcgga
gcacctctagagaacgatggtcaaggaagtgtctacatattccatgggacgagtagtgga
atcagcaaaatcaaatctcagagaatttcagcctcagatgtacagtctggattaaagtat
tttggacagtccatcagtcagacttccctggacatgagtttggactcactcccagacttg
gccgtgggatcaaagggggctgttctcttactcaggtccaggcctatagtaacattgatg
gcacgagtttccttcaacccagacaaaatccccacgaaccagtcggactgcagtacaccc
ctgagaaacattgctgaagtctgtttcaccatgaccagacaaacaacagacacaaaagat
cttcaagcaaagattaactatactttaactctggatgtgacccgccaagctccaaactat
cgtgcttatatcagtccaaagatacggaaggaaacgaaaactattacattaagacttcaa
aagcgatgcttctctcataacttctttactgaggcttgcccagaggactccctcaatgaa
ctgtccaatgagcttgacttcacatttgaagggttgccaacatctcctggtggcctcagc
tctagcctttccccgcagtctccgactaccacatatcatcctttaggttttgagatcaac
tgtggcgctgataacaactgcattgacaacctgaaagtggattttaatttcactaggtct
tcagaggtgagggttggcatagatgaggtgataaatgtgacagtgtcagtcgagagcagg
gaagagaactcttacaacagccacattattctcacataccctgcaggactttcattcagg
aagttcaccatactccagggaagagtggagtgtaactcatcagacagtgtgggaaatgta
atggggggacaaagtgactgcaccattgacaagccaatcttcaagagcaattctaaggct
ctcttagtaatttcctatgggattgattcaaagactcaatttggccaaatgatggtattc
actgcaaatgcctcaagtggaaatacacactcaagagagagtgaacttttcaaagtaaaa
gagattggtgtgaaatacagcatttttgttgtgattaaaagaaatgaggattcaaccagt
tatgttaatttcactgctgggaaaaatgatttgcagaaacatgtgaaacaatcctttgag
gttgaaaattatggaagaggcttcaatgttactgtgataatcaaggtgccaatgaagctt
ggtgacaaagacatctgggctgatccaaatggtatacagattcaaggttgtcaaagacac
aaggatgaggaacctactgccacagagtttgtggacaagctgcagaaaaatcatgctgtg
gactgctctgtcgcaaattgcggggtgttcatatgcaaaagcgtcattagaaatcaggat
cgtaactcttacaacatcactggtaacctcagctctggatggatagaacagattggtctt
gagtctgcccagttcaacttggtcagcagtgccactgtggattatgacagaaaccaatac
atctattattcttcggactccaaaaacaacccacctatacaaaagattgaaactcaggtg
gaggtgtatcctgaggttgacttcacaaagggggtcattgggggtgttgtgggaggtctg
ctgctgttagctttgatcacagctgggctttataaggctgggtttttcaaaagccagttg
aagcagatgatgcagaatacatcagaagatggaccagggaatgatggagaagctgcctcg
cctgaataa

  All links  
Ontology (6)   
   KEGG BRITE (6)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (32)   
   KEGG ORTHOLOGY (1)   
   RefGene (28)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (52)   

Download RDF
DBGET integrated database retrieval system