KEGG   Salmo salar (Atlantic salmon): 106580766
Entry
106580766         CDS       T04363                                 
Name
(RefSeq) transcription elongation factor SPT5
  KO
K15172  transcription elongation factor SPT5
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    106580766
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sasa03021]
    106580766
   03019 Messenger RNA biogenesis [BR:sasa03019]
    106580766
Transcription machinery [BR:sasa03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription elongation factors
     106580766
  RNA polymerase I system
     106580766
Messenger RNA biogenesis [BR:sasa03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    DRB sensitivity inducing factor (DSIF) complex
     106580766
SSDB
Motif
Pfam: KOW Spt5-NGN Spt5_N DUF3912 DUF150_C Ribonuc_P_40 Arabino_trans_N
Other DBs
NCBI-GeneID: 106580766
NCBI-ProteinID: XP_014017631
UniProt: A0A1S3NQZ8
Position
ssa20:complement(46479318..46504482)
AA seq 1087 aa
MSDSEDSDFSDNQSEQSSEAEEVDKNEAEEDGQASLSGSDKAAEEEGEDLADEEEYDEEE
EEDDDDRPRKKPRHGGFILDEADVDDEYEDEDPWEEGAEDILEKVNEEAEVSNIDHVVLD
EDNSGSRRLQNLWRDSREEALGEYYMRKYAKQSGNDFPGGSEELSDDITQQQLLPGVKDP
NLWTVKCKIGEERATAIALMRKFIAYQFTDTPLQIKSVVAPEHVKGYIYVESYKQTHVKA
AIDGIGNLRMGFWNQQMVPIKEMTDVLKVVKEVTNLKPKSWVRLKRGLYKDDIAQVDYVE
PSQNTISLKMIPRIDLDRIKARMSMKDWFAKRKKFKRPTQRLFDAEKIRSLGGDVSHDGD
FMIFEANRYSRKGFLFKSFAMSAVITEGVKPTLSELEKFEDQPEGIDLEVVTETAGKERE
HNLQAGDNVEVCEGELINLQGKILSVDGNKITIMPKHEDLKDPLEFPAHELRKYFRMGDH
VKVIAGRYEGDTGLIVRVEENFVILFSDLTMHELKVLPRDLQLCSETASGVDAGGQHEWG
ELVQLDPQTVGVIVRLERETFQVLNMHGKVLTVRHQAVNRRKDNRFAVALDSEQNNIHVK
DIVKVIDGPHSGREGEIRHIFRGFAFLHCKKLVENGGMFVCKTRHVVLAGGSKPRDVTNF
TVGGFAPMSPRISSPMHPGGGGGQQQRGGGGGGQMGRGRGRRDNDLIGQTVRISQGPYKG
YIGVVKDATESTARVELHSTCQTISVDRQRLTTMGAKRHGGMTSTHGRTPMYGSQTPMYG
TGSRTPMYGSQTPLHDGSRTPHYGSQTPLHDGSRTPGQSGAWDPNNPNTPSRADDDYEFG
YDDEPSPSPQGYGGTPNPQTPGYPEVPSPQVNPQYNPQTPGTPAMYNTEQYSPYAAPSPQ
GSYQPSPSPQSYHQVAPSPVGYQNTHSPASYHPTPSPMAYQASPSPSPVGYSPMTPGAPS
PGGYNPHTPGSNIDQTSCDWVTTDILVRVKDTFLDSQVVNQTGIIRSVTGGMCSVFLQDT
EKVVSISSEHLEPVTPTKNNKVKVILGEDREATGILLSIDGDDGIVRMELDDQLKILNLR
FLGKLEL
NT seq 3264 nt   +upstreamnt  +downstreamnt
atgtcggacagtgaggacagtgacttctctgacaaccagagtgaacaaagcagcgaagcc
gaggaggtggacaaaaatgaggcagaggaagatgggcaggcaagtttatctggcagtgat
aaggcagcagaagaggaaggggaagacttggcagatgaggaggagtatgacgaagaggag
gaagaggacgatgatgaccgtcccagaaagaaacccaggcatggaggtttcatcttggat
gaagccgatgtggacgatgagtatgaagatgaagacccatgggaggaaggtgctgaggat
attttggagaaagttaacgaggaagctgaggtgtccaacattgaccatgtggtccttgat
gaggataactctggctcccgcaggctgcagaacctctggagagattccagagaggaggcc
ttgggtgaatattacatgaggaaatatgccaagcaatcaggaaatgatttccctgggggt
tctgaggaactgtctgatgacatcacccagcagcagctgctccctggcgtcaaggatcct
aatctttggacggtcaagtgtaagattggggaagagagagcaactgccattgccttgatg
aggaaatttattgcctatcaattcacagacacgcccctccaaatcaagtcggtagtggct
cccgaacatgtcaaaggttacatctatgtagagtcgtacaagcagactcacgtcaaagct
gcaattgacggaataggcaacctgaggatgggcttctggaaccagcagatggttcccatc
aaggagatgacagacgtcctcaaggtggtcaaagaggtgaccaacctcaagcccaagtcc
tgggtccgactcaagagaggcctatacaaagatgacatcgcccaggtggactatgtggag
cccagtcaaaacacgatatcactgaagatgattcccaggatagatttggacagaatcaag
gcccggatgagcatgaaagactggtttgcaaagcggaagaagttcaagagaccaacccag
agactcttcgatgcagaaaagatcaggtcacttggtggggatgtcagccatgatggagac
ttcatgatatttgaagctaaccgctacagccgcaaagggttcctcttcaagagctttgcc
atgtctgctgtgatcactgaaggagtgaaacccactctgtcggagctggagaagtttgag
gaccagccagaaggcattgatctggaggtggtgactgaaaccgcaggtaaagagcgtgag
cacaacctccaggccggggacaacgtggaggtgtgtgaaggggagctgatcaacttgcag
ggcaagatcctgagtgtggatggcaacaagatcaccatcatgcccaagcatgaggacctc
aaggatcctctggagttcccggcccatgagttgaggaagtacttccgtatgggtgaccac
gtcaaggtgatagcaggccgctacgagggcgacaccggcctcatcgtacgcgtggaggag
aactttgtcatcctcttctctgacctcaccatgcacgagttgaaggtcctgcccagggac
ttgcagctgtgctctgagacggcatcaggggtagatgccgggggccagcacgagtggggg
gagctggtccaactggacccccagaccgtgggagttattgtcaggctggagagggagaca
ttccaggtcctcaacatgcacggcaaggtgctgacggtgcgtcaccaagcagtgaatcga
cggaaagacaaccgctttgccgtggcactggactctgagcagaacaatatccacgtcaaa
gacatcgtcaaggtcatcgacgggccacactcggggcgtgagggagagatccgccacatt
ttccgaggctttgccttcttgcactgcaagaagctggtggagaacggcggcatgttcgtc
tgcaagacacgccacgtggttctggccgggggctccaagccccgagacgtcaccaacttc
actgtgggaggcttcgcgcctatgagtccacgcatcagcagccccatgcatccaggtggt
ggtggtggccagcagcagaggggcggtggaggtggaggacagatggggcgcggccggggc
aggagggacaacgacctgattggacagactgtccgcatctcccagggaccatacaagggg
tacattggagtggtgaaggacgccacagagtcgacagccagagtggaactgcactcgaca
tgccagaccatctctgtggaccgacagcgtctcaccacaatgggagccaagaggcatgga
ggaatgacttccactcacggacgcacccccatgtacggttcccagacccccatgtacggg
acaggctcccgtacccccatgtacggctctcagacccccttacacgatgggagccgtact
cctcactacggctcgcagacgccgctgcatgatgggagcaggacgccagggcagagcgga
gcgtgggatcccaacaaccccaacacaccgtccagggcggatgacgactatgagtttggt
tatgatgacgagccctccccgtcccctcagggctacgggggcacgcctaacccccagacg
cccggctacccagaggtgccgtcaccccaggtcaacccccagtacaacccccagacacca
ggcaccccagccatgtacaacacagaacagtactcgccgtacgctgccccctccccacag
ggctcgtaccagcccagccccagtcctcagagttaccatcaggtggcacccagcccagtg
ggctaccagaacacacactcaccagccagctaccaccccaccccctcaccaatggcatat
caggccagtccgagccccagcccggtagggtacagccccatgacccccggcgccccctcc
ccgggcggctacaatccccacacccccggctccaacatcgaccagacctcttgcgactgg
gtcaccaccgacatcctggtgcgcgttaaggacaccttcctggacagccaggtggttaac
cagacaggcatcattcgcagtgtcacgggtggcatgtgctccgtcttcctccaggacaca
gagaaggtggtgagcatctccagtgaacacctggagcctgtcaccccaactaagaacaac
aaggtgaaggtgattctaggggaggaccgtgaggccacggggatcctactgagtatcgac
ggggacgacggcatcgtaaggatggagctggatgaccagctgaagattctcaacctccgc
ttccttggcaagctggagctctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (18)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (7)   
   Pfam (7)   
All databases (41)   

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