KEGG   Salmo salar (Atlantic salmon): 106585548
Entry
106585548         CDS       T04363                                 
Symbol
U520
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:3.6.4.13]
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106585548 (U520)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sasa03041]
    106585548 (U520)
Spliceosome [BR:sasa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    106585548 (U520)
 Complex C
   U5 SnRNP specific factors
    106585548 (U520)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 SWI2_SNF2 PhoH DUF603 Sigma54_activ_2
Other DBs
NCBI-GeneID: 106585548
NCBI-ProteinID: XP_014027366
UniProt: A0A1S3PIC5
Position
ssa24:complement(21119818..21135926)
AA seq 2137 aa
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLVGTKMGDKSQRTK
PSMLEERRAKRRKRDEDRHDMNKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPADDTRYHVLVNLGKKIS
DYGGDKELQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDDGSDEESEGEEADLGCTL
TANLGVTGDVMTAKKKELHPRDIDAFWLQRQLSRFYDDAIISQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKEKIIGKMETDPDLSKVL
YQLQETEKEDIIREERSRRERVRKSRVDNDLESMDIDHGESMTPKQLLDLEDLAFTQGSH
FMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFADDEVLVTIEKLPKYAQAGFEGFKTL
NRIQSKLFKTAMESDENLLVCAPTGAGKTNVALMAMLREIGKHINLDGTINLDDFKIIYV
APMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQVIVCTPEKWDIITRKGG
ERTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDV
ATCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV
LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYG
FAIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRW
TELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDML
NAEIVLGNVQNAKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSSDPLLERRRMDLIHTAA
NVLDKNSLVKYDKRTGAFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLS
SEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADM
VYVTQSAGRLMRAIFEIVLSRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFRKLPEEVIK
KIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVE
LTITPDFQWDDKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEP
LPPQYFIRVASDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNAAFETLY
QNKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITP
MEALAEQVFVDWHQKFQDALNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQ
RKNVQNVSLFIVDETHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVA
HWLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVV
FVPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLEKVTDGTLKETLANGVGYLH
EGLSTTERRIVEQLFNSGAVQVVVASRSLCWGTNISAHLVVIMDTQYYNGKIHAYVDYPI
YDVLQMVGKANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEIV
TKTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKC
ISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIR
HHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAVR
LIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPYFTSEHIKRCMDKGVES
IFDIMEMEDEDRSGLLQLSDTQIADVARFCNRYPNIELSYEVAEKENIKSGGPVLVLVQL
EREEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVLGV
HNYTLYFMSDAYMGCDQEYKFSVDVKEADSDGDSDSD
NT seq 6414 nt   +upstreamnt  +downstreamnt
atggcggatgttactgcacgtagcttgcagtatgagtacaaagcgaactccaacttggtc
ttgcaagcggaccgttcgctcattgaccgcacaaggcgtgatgagcccacaggagaggtg
ctgtccctggtggggaagttggtgggaaccaagatgggtgacaagtcccagaggaccaaa
ccttcaatgctggaggagagacgggcaaagaggaggaagagagatgaggacaggcatgac
atgaacaagatgaagggcttcaccctcctgtcagagggcattgatgagatggtgggcatc
gtgtacaagcctaagaccaaggagaccagggagacctatgaggtccttctcagcttcatc
caggctgcgcttggagatcagccgagagatatcctgtgtggagcggctgacgaggtgctg
gctgtgctgaagaatgacaagatgagggacaaggagagacggcgggaagtggagcagtta
ctagggcctgcagatgacacacgctaccacgtgttggtcaacctgggcaagaagatcagt
gactacgggggtgacaaagagctccagaacatggatgacaacattgacgaaacatacgga
gtgaatgtccagtttgaatctgatgaggaggagggtgatgaggaccagtttggggaggtg
cgagatgacggctcagacgaagagagtgaaggagaggaagcagacttgggctgcactctg
acagccaatcttggtgtgacaggtgatgtgatgacagccaagaagaaggagctgcaccct
cgtgacatcgatgccttctggctccaacgtcagctcagccgtttctatgacgatgccata
atctctcagaagaaagcagatgaggttctggagatcctcaagacggccagtgatgaccga
gaatgtgagaaccagctggtcttactgttgggattcaacacctttgacttcatcaaaatc
cttcgtcagcatcgtcgcatgatccagtactgtaccatgttggcaagtgctcagagcgaa
gcagagaaggagaagatcataggaaagatggagaccgatccagacttgtccaaagttctt
tatcagctgcaggagactgagaaggaggatattattagggaagagcgatctcgcagggag
agagtaaggaagtctcgcgtggacaatgacttggagtctatggacattgaccatggagag
tccatgacccctaaacagttgctggacctggaggacctggccttcacccagggaagccac
ttcatggccaacaagaggtgccagctgcccgatggctcctttcgcaagcagcgcaaaggc
tacgaggaggtgcacgttcctgcactcaaacccaagcctttcgctgatgatgaggtgctg
gtgaccattgagaagctgcccaagtatgcccaggcaggtttcgaagggttcaaaaccctg
aaccgcattcagagcaagctgttcaagactgctatggagtccgatgagaacctgctggtg
tgtgctcctacgggagcaggtaagaccaacgtggccctcatggctatgctaagagagatc
ggcaagcacatcaacctggacggaaccatcaacttggacgacttcaagatcatctatgtg
gctcctatgcgctcgctggtacaggagatggtgggaagctttagtaagcgtctggccagt
tatggcatcacagtgtctgagctgacaggagaccaccagctgtgtaaagaggagatcaat
gccacccaggtcatcgtctgcaccccagagaaatgggacatcatcacacgcaaaggaggc
gagcgcacctacacccagctagtgcgcctcatcatcattgatgagatccatctgctgcat
gacgaccgtgggccagtcctggagtctctggtggccaggaccatccgcaacgtggagctg
acccaggaggacgtgcgtctgctgggtctcagtgccaccctgcccaactacgaggacgtg
gccacctgcctgcgagtagaccccgccaagggactcttctacttcgacaacagtttccgt
ccagtgcccctggaacagacgtatgtgggcatcactgagaagaaggctatcaagcgcttc
cagatcatgaatgaaattgtctatgagaagatcatggagcatgctgggaagaaccaggtg
ctggtgtttgtccactccaggaaggagacggggaagacggcccgggctatcagggacatg
tgtctggagaaagacaccctggggctgttcctgagggaggggtcagcctcaactgaggtc
ctcaggactgaggcagaacagtgtaagaaccttgagctgaaggacttgctgccctacggc
tttgccatccatcatgctggtatgaccagagtggaccgtaccttggtggaagatctcttt
gctgatcgccacatccaggtgctggtgtccacagccacattggcctggggtgtgaatctg
cctgcacatactgtcatcatcaaaggcacccaggtgtatagcccagaaaaaggcagatgg
acagagctgggagccctagacattctacagatgcttggtcgagctgggcgtcctcagtac
gacaccaagggagagggcattctgatcacatcccatggggagctgcagtactacctatct
ctgctcaaccagcagctgcccatcgagagccagatggtttccaagttgccagacatgctc
aacgctgagatagtgctgggcaacgtgcagaatgctaaggacgcagtgaactggctgggc
tacacctacctgtacgtgcgcatgctccgtaaccccaccctgtacggagtctcccatgac
gaccgcagctctgaccccctgctggagcgccgcaggatggacctgatccacactgcagcc
aatgtgctggacaagaacagcctggtcaagtacgacaagcggaccggtgctttccaggtg
acggatctgggtcgcatcgccagccacttctacatcacccatgactccatccagacgtac
aaccagctgctgaagcccaccctcagtgagatcgagcttttccgtgtcttctccctctcc
tctgagttcaggaacatcactgtcagagaggaagagaagctggaactgcaaaagctgctg
gagagagttcccattccagtgaaggagagcattgaggagcccagcgccaagatcaacgtg
ctgctccaggcttacatctctcagctcaaactggagggctttgctctgatggctgacatg
gtctacgtgacgcagagtgctggaagactgatgcgagccatctttgagatcgtcctgagc
aggggatgggcccagctcacagacaaaaccatgaacctctgcaagatgattgacaagagg
atgtggcagtccatgtctcctctgcgtcagttcaggaagctcccagaggaagtcatcaag
aagattgagaagaagaacttccccttcgagcgcctctatgacctcaaccacaatgagatt
ggtgagttgatccgcatgcccaagatggggaagaccatccataagtacgtgcaccagttc
cccaaactggacctggccgttcacctgcagcccatcacccgttccacactgaaggtggag
ctcaccatcacaccggacttccagtgggatgacaaggtgcatggctcgtcagaggccttc
tggatcctggtggaggatgtagacagtgaggtcatcctacaccacgagtacttcctgctc
aaggccaagtatgcccaggacgagcacctggtcaccttctttgtgcccgtgttcgagccc
ctgcccccacagtacttcatccgcgtggcctcggaccgctggctgtcctgtgagacccag
ctgccagtgtctttccgccacctgatcctgccagagaagtacccccctcctactgagctg
ctggacttgcagcccctgcctgtgaccgccctgcgtaatgccgccttcgagaccctctat
cagaacaagtttcccttcttcaaccccatccagacacaggtgttcaacgctgtgtacaac
agtgatgacaacgtgtttgtgggagcccccaccggcagtgggaagaccatctgtgctgag
tttgccatcctgaggatgctgctgcacaacgcagagggacgttgtgtctacatcacaccc
atggaggccctggctgaacaggtgtttgttgactggcaccagaagttccaggatgctctg
aataagaaggtggtgttgctgacaggagagactagcactgacctgaagctgctggggaag
ggtgacatcattgtcagcaccccggacaaatgggacatcctgtcgcgccgctggaagcag
aggaagaacgtccagaacgtcagcctcttcatcgtggacgagactcacctcattggagga
gagaacgggcctgtgttggaggtgatctgctccaggatgaggtacatctcgtctcagatt
gagcgtcccatccgcatcgtggccctcagctcctccctgtccaacgccaaagacgtggcc
cactggctgggatgcagcaccaccgcaacctttaacttccaccccaacgtcaggcctgtc
cctctggagctgcacatccagggcttcaatgtgagtcacacccagactcgcttgctgtcc
atggccaagccagtataccacgccatcatgaagcactccccctctaaaccggctgtggtg
ttcgtcccgtcccgccgacagacccgcctcaccgccatcgacatcctcaccttctgtgct
gctgatgtggtccctcagaggttcctgcactgcactgagaaggacctggctcccttcctg
gagaaggtgacagacggcaccctgaaggagacgctggccaatggggtgggctacctgcac
gagggcctgtccactacagaacgcaggatcgtggagcagctcttcaactcgggtgcagtc
caggttgtagtggcctcacgctccctctgctggggcacaaacatatctgctcacctggtt
gttatcatggacacccagtactacaatggcaaaatacatgcctatgtggactaccctatc
tacgatgtgctccagatggtgggcaaggccaaccggcccctgcaggacgatgagggacgc
tgtgtcatcatgtgtcagggttccaaaaaggatttcttcaagaagttcctgtatgagccc
ctgccggtggaatctcacctggaccactgcatgcacgaccacttcaatgctgagatcgtc
accaagacagtggagaacaaacaggacgcagtggactacctgacctggaccttcctgtac
cgccgcatgacccagaaccccaactactacaacctgcaaggcatgtctcaccgtcatctg
tccgaccacctgtcagagctggtggagaacaccctgcatgacctggagcagtccaagtgc
atcagcatcgaggatgagatggacgtggcacctcttaacttgggcatgatcgctgcctac
tactatatcaactacaccactatcgagttgttcagtatgtccctgaacgccaagaccaag
atccgtggattgattgagatcatttccaatgctgctgagtacaagaacatccccatcaga
caccatgaggacaacctgctcagacagctggcccagaaggtgccccacaaactgaacaac
cccaagttcaacgacccccatgtgaagaccaacctgctgctgcaggctcacttatccagg
atgcagttgagcgctgagctccagtcagacacagaggagatcctcagcaaggctgtgcgt
ctgatccaggcctgtgtagatgtgctgtccagtaatggctggctgagccctgcgctggct
gctatggagctggctcagatggtcacccaggccatgtggtccaaggactcctacctcaaa
cagctgccctacttcacctctgagcacatcaaacgctgcatggacaagggtgtggagagt
atctttgacatcatggagatggaggatgaggatcgtagtgggctgctgcagctctcagac
acccagatagctgacgtggctcgcttctgtaaccgctaccctaacattgaactgtcctac
gaggtggcagagaaggagaacatcaagagtggaggtccagtgctggttctggtccagttg
gagcgagaagaagaggtgactgggcctgttattgccccactcttcccccagaaacgtgag
gagggctggtgggtggtgatcggagaccccaagtccaacagcctgatctccattaagagg
ctgaccctgcagcagaaggccaaggtgaagctggactttgttgcaccagtgctgggcgtt
cacaactacacactgtacttcatgagtgatgcctacatgggctgtgatcaggagtataag
ttcagcgtggatgtgaaggaggcagacagcgatggagacagtgattcagactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (28)   
   KEGG ORTHOLOGY (1)   
   RefGene (24)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (12)   
   Pfam (12)   
All databases (54)   

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