KEGG   Salmo salar (Atlantic salmon): 106604138
Entry
106604138         CDS       T04363                                 
Name
(RefSeq) THO complex subunit 3-like
  KO
K12880  THO complex subunit 3
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03013  Nucleocytoplasmic transport
sasa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106604138
  09122 Translation
   03013 Nucleocytoplasmic transport
    106604138
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sasa03019]
    106604138
   03041 Spliceosome [BR:sasa03041]
    106604138
Messenger RNA biogenesis [BR:sasa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     106604138
Spliceosome [BR:sasa03041]
 Complex C
  Other components
   EJC/TREX
    106604138
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    106604138
SSDB
Motif
Pfam: WD40 ANAPC4_WD40 RMC1_N eIF2A NBCH_WD40 PD40 Peptidase_S9_N Coatomer_WDAD Nup160 DPPIV_N Cytochrom_D1 IKI3 YNCE
Other DBs
NCBI-GeneID: 106604138
NCBI-ProteinID: XP_014054016
UniProt: A0A1S3RNV3
Position
ssa05:4466559..4470830
AA seq 322 aa
MASRYYQEMQESFRNNNKSREFPAHTAKVHSVAWSCDGRRLASGSFDKTASVFVLEKDRL
VKENNYRGHGDSVDQLCWHPTNPDVFVTASGDKTIRIWDVRTTKCTATVNTKGENINICW
SPDGQTIAVGNKDDVVTFIDVKSHRSRAEEQFKFEVNEISWNNDNDMFFLTNGNGCINIL
SYPELKPIQSINAHPSNCICIKFDPTGKYFATGSADALVSLWTVEELVCVRCFSRLDWPV
RTLSFSHDGKMLASASEDHFIDIAEVETGEKLWEVQCESPTFTVAWHPKRPLLAYACDDK
EGKYDNNREAGTVKLFGLPNDS
NT seq 969 nt   +upstreamnt  +downstreamnt
atggcgtccagatattatcaagagatgcaagagagtttcagaaataacaacaaaagcagg
gaattccctgcgcataccgctaaagttcattccgtagcatggagttgcgacggcaggagg
ttggcatctgggtcttttgataaaacagcaagcgtatttgtcttggaaaaagaccgtttg
gtgaaagagaacaactacagaggccatggagacagtgttgatcagctgtgttggcatcct
accaacccagacgtgtttgtcactgcatcaggggacaagaccatacgcatctgggacgtc
agaacaacaaagtgcacggctactgtcaacactaaaggggaaaacatcaatatctgctgg
agtcctgacggccaaacgatagccgttgggaacaaggatgatgtggttaccttcatcgac
gtcaaatcacaccggtcacgggctgaggagcagtttaagtttgaagtcaacgagatctca
tggaataatgacaacgacatgttctttctcaccaatggaaacgggtgcatcaacatcttg
agttaccctgagctgaagcccatccagtcgatcaacgcccatccctccaactgcatctgc
atcaagtttgaccccacggggaagtactttgccacaggaagtgcagatgctctggtcagt
ctgtggaccgttgaagaactggtctgtgttcgctgtttttccaggttggactggccagtg
aggacattgagtttcagccatgatgggaagatgttggcttcagcctcagaggaccacttc
atagacatagcagaggttgaaacaggagagaagctgtgggaggtccagtgtgagtctcct
acattcacagtagcctggcatcctaagagaccgctgttggcctacgcatgtgatgacaag
gaagggaagtacgacaacaatagagaggcaggcactgtcaaactgtttggattacctaat
gattcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (34)   

Download RDF
DBGET integrated database retrieval system