KEGG   Salmo salar (Atlantic salmon): 106610969
Entry
106610969         CDS       T04363                                 
Symbol
HIF1A
Name
(RefSeq) hypoxia-inducible factor 1-alpha-like
  KO
K08268  hypoxia-inducible factor 1 alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04137  Mitophagy - animal
sasa04140  Autophagy - animal
sasa04148  Efferocytosis
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09140 Cellular Processes
  09141 Transport and catabolism
   04140 Autophagy - animal
    106610969 (HIF1A)
   04137 Mitophagy - animal
    106610969 (HIF1A)
   04148 Efferocytosis
    106610969 (HIF1A)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:sasa03000]
    106610969 (HIF1A)
Transcription factors [BR:sasa03000]
 Eukaryotic type
  Basic helix-loop-helix (bHLH)
   Factors with PAS domain
    106610969 (HIF1A)
SSDB
Motif
Pfam: PAS_3 HIF-1a_CTAD PAS_11 HIF-1 PAS PAS_4 PAS_9 HLH
Other DBs
NCBI-GeneID: 106610969
NCBI-ProteinID: XP_014066198
UniProt: A0A1S3SPC5 C0HAF0
Position
ssa09:25131988..25181704
AA seq 802 aa
MHLSTIYGNTNYGFNLNSYVNFRLFLYGFETQFIFLAEAQNKSVVLKMNTRVVPEKKSRV
SSERRKEKSRDAARYRRGKESEVFYELAQELPLPHSVTSNLDKASIMRLAISYLHMRKLL
STDDKTVEEEQEESEMDSQLNVSYLKALEGFLMVLSEDGDMIYLSENVNKYLGLAQFDLT
GLSVFEYTHPCDHEELREILVHRTGTSKKSKGPNTERSFFLRMKCTLTSRGRTVNVKSAT
WKVLHCSGHVAPAEQNPCGHKEPPVSYLVLVCDPIPHPSNIEAPLDTKTFLSRHTLDMKF
TYCDERITELMGYDPEDLLNRSVYEYYHALDSDHLIKTHHNLFVKGQVSTGQYRMLAKIG
GFVWVETQATVIYNNKNSQPQCVVSVNFVLSGIEEKMVLSLEQTEDMRSVKKELVEEEEE
DEGSEAEVSPVFLKEEKVDVIKLFTQAMEPLPLASLYDRLKEEPEALNLLAPAVGDTIIS
LDFSNPDSDILLKEVPLYNDVMLPSTSDKLALPHSMQPPSEQPLIPSASVDTKAGPDSFS
TPGSHSSTEPDIALNFCFPMDSDISAALKLDLVERLFAIDTEPKTPFTSQGMEDLDLEML
APYIPMDDDFQLRTLSPEEPLSCGPAQPLESSPLCSPLHLTQDVHSYTDSPFSAPSSRTA
SPAPELAASPCPASLLTMRAPQMDREIYLRTLATQNSQRKRKLALYQAVGIVNGALLQEP
PGPGKKLKVSELGSSEAPSNRTILLLPTDLASCLLGISSEGSGSPFTLPQLTRYDCEVNA
PVVGRQHLLQGEDLLCALDQVN
NT seq 2409 nt   +upstreamnt  +downstreamnt
atgcatttatcaacaatttatggaaacacaaattacggatttaatttgaatagctacgtg
aattttcgcttgtttttgtacgggttcgaaacacagtttatcttcttggctgaggctcaa
aataagtccgtcgtccttaaaatgaacacaagagttgtcccagaaaagaaaagcagggtg
agctcggagcggaggaaggagaagtcccgggatgcagcgcgataccggagggggaaggag
tcggaggtgttctatgagctggcccaggagctgcccctgccccacagtgtcacctccaac
ctggacaaggcttctatcatgagactggccatcagctacctgcacatgaggaaactgctg
agcacagatgataagacagtagaggaggagcaggaggagagtgagatggactcccagctg
aatgtctcctatctgaaggctctggagggcttcctcatggtgctgtctgaagacggggac
atgatctatctctctgagaatgtcaacaagtacttgggtctggcacagtttgacctgaca
ggacttagcgtgtttgagtacacacacccctgtgaccacgaggagctaagggagatcctg
gtacacagaacagggacctctaaaaagtccaagggaccaaacacagagcgtagcttcttc
ctgcggatgaaatgtaccctcaccagcagggggcgcactgtcaatgtcaaatcagccacc
tggaaggttctccactgctcaggccatgtagccccagctgagcagaacccctgtgggcac
aaggagccgcccgtgtcctacctggtgctggtctgtgaccccatcccccacccctccaac
atcgaggcgccgttggacaccaagaccttcctcagccgccacacactggacatgaagttc
acctattgtgacgagaggatcactgagctgatgggctatgatccagaggacctgttaaat
cgctctgtgtatgagtactaccatgccttggactcagaccacctcattaagacccatcac
aacttgtttgttaagggccaggtgagcacaggccagtaccgcatgctggctaagataggt
ggctttgtgtgggtggagactcaggccactgttatctacaacaacaagaactcccagccc
cagtgtgttgtctctgtcaactttgtgctcagtggcattgaggagaagatggtgctgtct
ctggagcagactgaggacatgaggtctgtaaagaaggagctggtggaggaggaagaagag
gacgagggctcagaggcagaggtgtcccctgtgttcctgaaggaggagaaggtggatgtg
attaaactgttcacccaggcaatggagcccctgccgctggccagcctgtacgacagactg
aaggaggaaccagaggccctcaaccttctggccccggccgtaggagacaccatcatctcc
ctggacttcagcaaccccgactctgacatcctgctgaaggaggtgcctctctacaacgat
gtgatgctgccctccaccagtgacaagctggccctgcctcactctatgcagccccccagt
gagcagcccctgatccccagtgcctcagtggacaccaaggcaggtccagactccttcagc
accccaggcagccacagctcaactgagcctgacatcgcactgaacttctgttttccaatg
gactctgacatcagtgctgcgcttaaactggacctggtagaaagactgtttgccatcgac
acagagcccaagacacctttcacctcacagggcatggaggacctggacctggagatgttg
gctccatacatccccatggatgatgacttccagctgcgcaccctgtccccagaggagccc
ctgtcatgtggcccagcccaacctctggagagctctcctctgtgctctcctctgcacctc
acccaggatgtccacagctacactgattccccctttagtgccccaagcagccggacagct
tccccagccccagagctggctgctagcccttgccctgcctccttactcaccatgagggcg
cctcagatggacagagagatctatctcaggacactggccacccagaactcacagcgcaag
agaaagttggctctgtatcaggctgtcggaatagtaaatggggcattgctccaggaacct
cctgggccgggtaaaaagctcaaggtgtctgagctgggcagctctgaggctccctccaac
aggaccatactgctcctacctacagacctggcaagctgcctgcttggcatctcctcggag
ggcagcggctcgccctttacccttccacagctgacccggtatgactgtgaggttaatgcc
cccgtggtgggtcgccagcacctgctgcagggtgaggatctgctgtgtgccctggaccaa
gtcaactga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   RefSeq(pep) (3)   
DNA sequence (9)   
   RefSeq(nuc) (3)   
   GenBank (3)   
   EMBL (3)   
Protein domain (8)   
   Pfam (8)   
All databases (54)   

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