KEGG   Salmo salar (Atlantic salmon): 106611634
Entry
106611634         CDS       T04363                                 
Name
(RefSeq) nuclear cap-binding protein subunit 1-like
  KO
K12882  nuclear cap-binding protein subunit 1
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03013  Nucleocytoplasmic transport
sasa03015  mRNA surveillance pathway
sasa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106611634
  09122 Translation
   03013 Nucleocytoplasmic transport
    106611634
   03015 mRNA surveillance pathway
    106611634
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sasa03019]
    106611634
   03041 Spliceosome [BR:sasa03041]
    106611634
Messenger RNA biogenesis [BR:sasa03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Cap binding complex
     106611634
Spliceosome [BR:sasa03041]
 Common components
  Common spliceosomal components
   Cap binding complex
    106611634
SSDB
Motif
Pfam: MIF4G_like_2 MIF4G MIF4G_like Jnk-SapK_ap_N AAA_11 AAA_13 Vfa1 RRF GBP_C EMC3_TMCO1 Afi1 FapA tRNA_bind_2 PHM7_cyt
Other DBs
NCBI-GeneID: 106611634
NCBI-ProteinID: XP_014067516
UniProt: A0A1S3ST44
Position
ssa09:59556360..59563611
AA seq 796 aa
MSRRRHSDGDDGGQSHKRRRTSEPIEIEDRLESLICRVGEKSTSSLESNLEGLAGVLEAD
LPNYKNKILRILCAVARLLPEKLTVYTTLVGLLNARNYNFGGEFVEAMIRQLKETLKANL
YTEALYLVRFLCDLVNCHVIAAPSMVAMFENFVSVTQEEDVPQVRSDWFVYVVLSSLPWV
GKELYEKKDVEMDRLLNQIDSYLKRRLKTHVPMLQVWTAEKPHPQEEYLDCLWAQIQKLK
KDRWQERHILRPYIAFDSVLCEALQHNLPPFTPPAHMPDCQYPMPRVIFRMFDYTDAPEG
PVMPGSHSVERFVIEDNLHNIIKSHWKERKTCAAQLLSYPGKNKIPLNYHIVEVIFGELF
QLPCPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMMYMRLDTMNTTCIDRLLNWFSHH
LSNFQFRWSWDDWTDCLALDADKPKPKFVKEVLEKCMRLSYHQRIVDIVPPTFSALIPAD
PIFFYKYQDEANSALPGYAVAITVGNAIKNRASNEEILTVLKDVPNPNQEDDDDEGEGFN
PLKIEVFLQTLLHLAAKSFSHSFSALAKFHEILKVLTDCDEGKLHILRVVYEVWRNHPQM
ISVLVDKLIRTQIVDCAAVANWLFSPNMAHEFTRFYVWEILHSTIRKMNKHVQKIQKELE
EAKDKLERQQHKKQKDSGDEEDMEKNSEDEDGQLEEQIERLQEKVESAQSEQKNLFLVIF
QRFIMMLTEHLVRCETGSVDFSTPWYKNCIERLQQIFLMHHVTIQQYMGTLENLLFTAEL
DHHILAVYQQFCALQL
NT seq 2391 nt   +upstreamnt  +downstreamnt
atgtcgagaagacggcacagtgacggagatgatggcggccagtctcacaaaagaaggaga
acgtctgagcccattgagattgaggatcgcctggaatcactgatatgtcgagtgggagaa
aagagtacctcttccctggaaagcaatttggaaggtcttgcaggtgtcttggaagccgac
ctccccaactacaaaaacaaaatcctccgcattttgtgtgctgtggctcgacttctaccc
gagaagctgaccgtgtacacaacattagtgggccttctcaatgccaggaactacaacttt
ggcggggagtttgtggaggccatgatccgacaactcaaagagaccttgaaggccaacctg
tacaccgaagcgctttacctagtgcgcttcctctgtgacctggtgaactgccacgtgatc
gctgctccctccatggtggccatgtttgagaactttgttagtgtcactcaggaggaagat
gtgccgcaggtgcgctcggactggtttgtctatgttgtactctccagtctcccctgggtt
gggaaggaactctatgagaagaaggatgtggagatggacaggctccttaaccagattgac
agttacctcaagaggcgactaaagactcatgtccccatgcttcaggtttggacagcagag
aagccacacccacaagaggagtacctggactgcctgtgggctcagatccagaagctgaag
aaggaccgctggcaggagcgccacatcctgcggccgtacatcgcctttgacagcgtgctg
tgtgaggccctgcagcacaacctgccacccttcaccccgcctgcccacatgcccgactgc
cagtaccccatgccccgcgtcatcttccgcatgttcgactacaccgatgcccccgagggt
cccgtcatgccaggcagccactctgtggagaggtttgtgattgaggataaccttcacaac
atcatcaaatcccactggaaagagaggaagacctgtgctgcgcagttgctcagctatcca
ggaaaaaataagatcccactcaactatcacattgtggaggtgatctttggagagctcttc
cagctgccctgtcccccccacatcgacgtcatgtacaccacactgctcatcgagctctgc
aagctgcagccaggctccctgcctcaagttttggcccaagccacagagatgatgtacatg
agactggacactatgaacactacttgcatagaccgactcctcaactggttctcccaccat
ttgagcaactttcagttccgatggagctgggacgactggacggactgtttagcgctggat
gcagacaagcccaagcccaagtttgtcaaggaggttctggagaaatgcatgaggctctcc
tatcatcagcgaatagtggacattgtcccgcccactttctcagccctcatcccagccgac
cccatcttcttttacaaataccaagatgaggccaacagtgcgctgccaggctatgccgtg
gccataaccgtgggcaacgccatcaagaaccgggcctccaacgaggagatcctcaccgtg
ctcaaagacgtgccaaaccccaaccaggaagatgacgacgatgagggcgagggcttcaac
cccctaaagatagaagtgttcctgcagacccttctccatctggctgccaagtccttcagc
cactccttcagtgccctggccaagttccatgagattctcaaggtcctgacggactgtgac
gagggcaagctgcacatcctccgggtggtctacgaggtctggaggaaccacccacaaatg
atctctgtgctggtggacaagttgatccgtacacagattgtggactgtgcagccgtagcc
aactggctcttctccccaaacatggctcatgaatttaccaggttttacgtgtgggagatt
ctgcactccaccatccgtaagatgaacaaacacgtccagaagattcagaaagagctggag
gaggccaaggataagctggagaggcaacagcataagaagcagaaggacagtggcgatgag
gaggacatggagaagaacagtgaggatgaggacggtcagctggaggagcagatcgagcgt
ctgcaggagaaggtggagtcggcccagagtgagcagaagaacctcttcctggtcatcttc
cagcgcttcatcatgatgctgacggagcacctggtgcgctgtgagacaggcagtgtggac
ttcagcacgccctggtacaagaactgcatcgagaggctgcagcagatcttcctcatgcat
catgtgaccatccagcagtacatggggaccctggagaacctgctgttcaccgccgagctt
gaccaccacatcctagctgtttaccagcagttctgtgccctgcagctctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (14)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (14)   
   Pfam (14)   
All databases (42)   

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