KEGG   Salmo salar (Atlantic salmon): 106611702
Entry
106611702         CDS       T04363                                 
Name
(RefSeq) pre-mRNA-processing factor 19-like
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03040  Spliceosome
sasa04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106611702
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    106611702
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sasa03041]
    106611702
   04121 Ubiquitin system [BR:sasa04121]
    106611702
   03400 DNA repair and recombination proteins [BR:sasa03400]
    106611702
Enzymes [BR:sasa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     106611702
Spliceosome [BR:sasa03041]
 Complex B
  Other components
   Prp19 complex
    106611702
 Complex C
   Prp19-CDC5 complex
    106611702
Ubiquitin system [BR:sasa04121]
 Ubiquitin ligases (E3)
  U-box type E3
   106611702
DNA repair and recombination proteins [BR:sasa03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    106611702
SSDB
Motif
Pfam: WD40 Prp19 ANAPC4_WD40 NBCH_WD40 U-box PROPPIN eIF2A Nup160 RMC1_N Cytochrom_D1 Nucleoporin_N zf-Nse ATG16
Other DBs
NCBI-GeneID: 106611702
NCBI-ProteinID: XP_014067664
UniProt: A0A1S3STJ6
Position
ssa09:65551840..65558404
AA seq 505 aa
MSLVCAISNEVPEHPCVSPVSNQVFERRLIEKFIAENGVDPMNGQPLSEEQLIDIKVSHP
IRPKAASATSIPAILKSLQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARL
TKEVTAAREALATLKPQAGLVAPQAMPASQPAAGGAGGEPMEVSEQVGMTPEIIQKLQDK
ATVLTTERKKRGKTVPEELVRAEDLSKYRQVASHAGLHSASVPGILCMDLCPSDTNKVLT
GGADKNVVVFDKKEEQIIATLKGHTKKVTSVIYHPSQSVVFSASPDSTIRVWSVTGGNCV
QVVRAHEASVTGLSLHATGDYLLSSSEDQYWAFSDIQTGRVLTKVTDEAAGVALTCAQFH
PDGLIFGTGTADSQIKIWDLKERTNVANFPGHSGPVTSIAFSENGYYLATGAQDSSVKLW
DLRKLKNFKTIALDNNYEVKSLVFDQSGTYLAVGGSDIRVYICKQWSEVLNFSDHSGLVT
GVAFGDNAQFLSSAGMDRSLKFYSL
NT seq 1518 nt   +upstreamnt  +downstreamnt
atgtctttggtttgcgcaatttccaatgaggtcccggagcacccctgcgtgtccccggtg
tccaaccaggtgttcgagcgccgactgatcgagaagttcatcgcggagaatggagttgac
cccatgaacggccaaccactgtccgaggagcaacttatcgatattaaagtgtctcatcct
atccgaccaaaggctgcctccgctaccagtattcctgccatactcaagtctctgcaagat
gagtgggatgcggtgatgctccacagtttcactctgaggcagcagctgcagacgactcgc
caggagctctctcacgccctctaccagcatgacgcagcctgcagagtcatcgcccgtctc
accaaggaggtcactgcagccagagaggccctggccacactcaagccccaagccggattg
gtcgcccctcaggctatgcctgcctctcagccagccgctgggggtgcaggtggggagccc
atggaggttagtgagcaggtgggaatgaccccagagatcatccagaagctccaagataag
gccaccgtccttaccacagagagaaagaagagaggcaagactgtgccagaggagctggtc
agggctgaggatctgagcaagtaccgacaagtggcttcccacgctggtcttcatagcgcc
agtgtcccaggaatcctgtgtatggacctctgtccttcagatactaacaaagtactcact
ggaggggctgataagaacgtggttgtgtttgataagaaggaggagcagatcatcgccacc
ctcaagggtcacaccaagaaggtcacctctgtcatctaccacccctcccagtcggtggtg
ttctctgcctctccagacagcaccatccgggtgtggtctgttaccgggggtaactgtgtc
caggtggtgagagctcacgaggcgagcgtgaccgggctgtcacttcacgccaccggagac
tacctgcttagctcctctgaggaccagtactgggccttctctgacatccaaactggccga
gtccttaccaaagtcactgatgaggctgctggtgttgctctgacttgtgctcagttccac
cctgacggtctgatcttcgggacgggaacagctgactcccaaatcaagatctgggatctg
aaggagcgcaccaacgtggccaacttccccggccactctggtcccgtcacctccatcgcc
ttctctgagaacggatactacctggccacaggtgcccaggacagctctgtgaagctgtgg
gatctgaggaaactgaagaacttcaagaccatcgccctggacaacaactacgaagttaag
tctctggtgtttgatcagagcggtacgtacttggctgtgggtggatctgacatcagggtg
tacatctgcaagcagtggtcggaggtcctaaacttcagtgaccactctggcctggtgacc
ggcgtggcgtttggagacaatgctcagttcctttcctccgccggaatggacagaagcctt
aagttctacagcctgtaa

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Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (65)   
   KEGG ORTHOLOGY (1)   
   RefGene (61)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (5)   
   RefSeq(nuc) (1)   
   GenBank (2)   
   EMBL (2)   
Protein domain (13)   
   Pfam (13)   
All databases (94)   

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