KEGG   Salmo salar (Atlantic salmon): 106612892
Entry
106612892         CDS       T04363                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03020  RNA polymerase
sasa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    106612892
  09124 Replication and repair
   03420 Nucleotide excision repair
    106612892
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sasa03021]
    106612892
   03400 DNA repair and recombination proteins [BR:sasa03400]
    106612892
Transcription machinery [BR:sasa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     106612892
DNA repair and recombination proteins [BR:sasa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      106612892
SSDB
Motif
Pfam: RNA_pol_Rpb4 Tfb4 Rop
Other DBs
NCBI-GeneID: 106612892
NCBI-ProteinID: XP_014069995
UniProt: A0A1S3T089
Position
ssa09:110031770..110033922
AA seq 142 aa
MASGGGSTTVGDIEEDASQLLFPKEFENAETLLNSEVHMLLEHRKQQNESAEDEQELSEV
FMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELASLANLCPEAAEEAKALIPSLEG
RFEDEELQQILDDIQTKRSFQY
NT seq 429 nt   +upstreamnt  +downstreamnt
atggcgtccggaggcggttcaacaactgtcggagatattgaggaggacgcgtctcagtta
cttttccccaaagagttcgaaaacgcggagacacttctaaactccgaggtacacatgctt
ctggagcatcgcaagcagcagaacgagagtgcagaggacgaacaagagctatcggaggtc
ttcatgaaaactctgaattatactgcacgtttcagccggttcaaaaacagagaaactata
gccagtgtccgcagcttgctcttacagaagaagctgcataaatttgagctggccagtttg
gccaacctgtgtccagaagcagcggaggaggccaaagccctcatccctagtctggagggg
cggtttgaggatgaggagctgcagcagatccttgatgacatccagaccaagagaagtttc
cagtactga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (19)   
   KEGG ORTHOLOGY (1)   
   RefGene (15)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (3)   
   Pfam (3)   
All databases (33)   

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