KEGG   Staphylococcus aureus subsp. aureus Mu50 (MRSA/VISA): SAV1904
Entry
SAV1904           CDS       T00052                                 
Symbol
dnlJ
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
sav  Staphylococcus aureus subsp. aureus Mu50 (MRSA/VISA)
Pathway
sav03030  DNA replication
sav03410  Base excision repair
sav03420  Nucleotide excision repair
sav03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:sav00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SAV1904 (dnlJ)
   03410 Base excision repair
    SAV1904 (dnlJ)
   03420 Nucleotide excision repair
    SAV1904 (dnlJ)
   03430 Mismatch repair
    SAV1904 (dnlJ)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:sav03032]
    SAV1904 (dnlJ)
   03400 DNA repair and recombination proteins [BR:sav03400]
    SAV1904 (dnlJ)
Enzymes [BR:sav01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SAV1904 (dnlJ)
DNA replication proteins [BR:sav03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SAV1904 (dnlJ)
DNA repair and recombination proteins [BR:sav03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SAV1904 (dnlJ)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SAV1904 (dnlJ)
   MMR (mismatch excision repair)
    DNA ligase
     SAV1904 (dnlJ)
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SAV1904 (dnlJ)
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 RNA_pol_A_CTD zf-NADH-PPase PTCB-BRCT HHH zf-IS66
Other DBs
NCBI-ProteinID: BAB58066
UniProt: Q99SY3
Position
complement(2046290..2048293)
AA seq 667 aa
MADLSSRVNELHDLLNQYSYEYYVEDNPSVPDSEYDKLLHELIKIEEEHPEYKTVDSPTV
RVGGEAQASFKKVNHDTPMLSLGNAFNEDDLRKFDQRIREQIGNVEYMCELKIDGLAVSL
KYVDGYFVQGLTRGDGTTGEDITENLKTIHAIPLKMKEPLNVEVRGEAYMPRRSFLRLNE
EKEKNDEQLFANPRNAAAGSLRQLDSKLTAKRKLSVFIYSVNDFTDFNARSQSEALDELD
KLGFTTNKNRARVNNIDGVLEYIEKWTSQRESLPYDIDGIVIKVNDLDQQDEMGFTQKSP
RWAIAYKFPAEEVVTKLLDIELSIGRTGVVTPTAILEPVKVAGTTVSRASLHNEDLIHDR
DIRIGDSVVVKKAGDIIPEVVRSIPERRPEDAVTYHMPTHCPSCGHELVRIEGEVALRCI
NPKCQAQLVEGLIHFVSRQAMNIDGLGTKIIQQLYQSELIKDVADIFYLTEEDLLPLDRM
GQKKVDNLLAAIQQAKDNSLENLLFGLGIRHLGVKASQVLAEKYETIDRLLTVTEAELVE
IHDIGDKVAQSVVTYLENEDIRALIQKLKDKHVNMIYKGIKTSDIEGHPEFSGKTIVLTG
KLHQMTRNEASKWLASQGAKVTSSVTKNTDVVIAGEDAGSKLTKAQSLGIEIWTEQQFVD
KQNELNS
NT seq 2004 nt   +upstreamnt  +downstreamnt
atggctgatttatcgtctcgtgtgaacgagttacatgatttattaaatcaatacagttat
gaatactatgtagaggataatccatctgtaccagatagtgaatatgacaaattacttcat
gaactgattaaaatagaagaggagcatcctgagtataagactgtagattctccaacagtt
agagttggcggtgaagcccaagcctctttcaaaaaagtcaaccatgacacgccaatgtta
agtttagggaatgcatttaatgaggatgatttgagaaaattcgaccaacgcatacgtgaa
caaattggcaacgttgaatatatgtgcgaattaaaaattgatggcttagcagtatcattg
aaatatgttgatggatacttcgttcaaggtttaacacgtggtgatggaacaacaggtgaa
gatattaccgaaaatttaaaaacaattcatgcgatacctttgaaaatgaaagaaccatta
aatgtagaagttcgtggtgaagcatatatgccgagacgttcatttttacgattaaatgaa
gaaaaagaaaaaaatgatgagcagttatttgcaaatccaagaaacgctgctgcgggatca
ttaagacagttagattctaaattaacggcaaaacgaaagctaagcgtatttatatatagt
gtcaatgatttcactgatttcaatgcgcgttcgcaaagtgaagcattagatgagttagat
aaattaggttttacaacgaataaaaatagagcgcgtgtaaataatatcgatggtgtttta
gagtatattgaaaaatggacaagccaaagagagtcattaccttatgatattgatgggatt
gttattaaggttaatgatttagatcaacaggatgagatgggattcacacaaaaatctcct
agatgggccattgcttataaatttccagctgaggaagtagtaactaaattattagatatt
gaattaagtattggacgaacaggtgtagtcacacctactgctattttagaaccagtaaaa
gtagctggtacaactgtatcaagagcatctttgcacaatgaggatttaattcatgacaga
gatattcgaattggtgatagtgttgtagtgaaaaaagcaggtgacatcatacctgaagtt
gtacgtagtattccagaacgtagacctgaggatgctgtcacatatcatatgccaacccat
tgtccaagttgtggacatgaattagtacgtattgaaggcgaagtagcacttcgttgcatt
aatccaaaatgccaagcacaacttgttgaaggattaattcactttgtatcaagacaagcc
atgaatattgatggtttaggcactaaaattattcaacagctttatcaaagcgaattaatt
aaagatgttgctgatattttctatttaacagaagaagatttattacctttagatagaatg
gggcagaaaaaagttgataatttattagctgccattcaacaagctaaggacaactcttta
gaaaatttattatttggtctaggtattaggcatttaggtgttaaagcgagccaagtgtta
gcagaaaaatatgaaacgatagatcgattactaacggtaactgaagcggaattagtagaa
attcatgatataggtgataaagtagcacaatctgtagttacttatttagaaaatgaagat
attcgtgctttaattcaaaaattaaaagataaacatgttaatatgatttataaaggtatc
aaaacatcagatattgaaggacatcctgaatttagtggtaaaacgatagtactgactggt
aagctacatcaaatgacacgcaatgaagcatctaaatggcttgcatcacaaggtgctaaa
gttacaagtagcgttactaaaaatacagatgtcgttattgctggtgaagatgcaggttca
aaattaacaaaagcacaaagtttaggtattgaaatttggacagagcaacaatttgtagat
aagcaaaatgaattaaatagttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (11)   
   Pfam (11)   
All databases (32)   

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